PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro06_G11847

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

bZIP

Protein Properties

Length: 534aa MW: 58724.7 Da PI: 8.7998

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro06_G11847	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	23.9	9.2e-08	175	237	1	63
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 eke +r rr NRe+Ar +R++a +e L++k++ L++eN++Lk + e k++++l+ + Ro06_G11847 175 EKEERRIRRILANRESARQTIRRRQALCEDLTKKSADLTSENESLKRKKELALKQYQSLEETN 237 78999*****************************************99999*9998765 PP

Sequence ? help Back to Top
Protein Sequence Length: 534 aa Download sequence
MVCSETTRSF PSSSAASSSS SSSASSVTVS AERFSGGAAD PMMVKEELEA AEALADLAHL 60 AMRESSGAES AGNWGLKGKR AKKRVKSESP PTLSGSNPVP ARPDLPQDQA VIGPAQCERV 120 CTDVLGEPVK TELVTSNKIA KSEHDAELTK STPICTTSYP SFSCTKSRRN LTEEEKEERR 180 IRRILANRES ARQTIRRRQA LCEDLTKKSA DLTSENESLK RKKELALKQY QSLEETNRLL 240 KVQMAKAKKT EVEETPDENM SSYVLPSSSP TSSPLFLFNR PSFTPVFWPS IIQSSNSIQL 300 QQVSQNPMAI PSNISLPSNG TADSSHELGN PININGTRTP LYVFPCPWFF PHFDNGNGLQ 360 PQSSCPENKQ KGAFFNNQYS ASSSSRSVAQ LDNYQSAFPV RLDTEASGSR EARPRTDLHE 420 TPAQFPLDGG DHYTVFHPKE NGSKEIFLSP LLNHGRVAST IKHENGLESD YSANTEKSLT 480 ASHTFSALPE KNSEPIIYPN RKIADAIAAA EARKRRKKLT KLKNLHGRQC RMQC

Sequence ? help Back to Top

Protein Sequence Length: 534 aa Download sequence

MVCSETTRSF PSSSAASSSS SSSASSVTVS AERFSGGAAD PMMVKEELEA AEALADLAHL  60
AMRESSGAES AGNWGLKGKR AKKRVKSESP PTLSGSNPVP ARPDLPQDQA VIGPAQCERV  120
CTDVLGEPVK TELVTSNKIA KSEHDAELTK STPICTTSYP SFSCTKSRRN LTEEEKEERR  180
IRRILANRES ARQTIRRRQA LCEDLTKKSA DLTSENESLK RKKELALKQY QSLEETNRLL  240
KVQMAKAKKT EVEETPDENM SSYVLPSSSP TSSPLFLFNR PSFTPVFWPS IIQSSNSIQL  300
QQVSQNPMAI PSNISLPSNG TADSSHELGN PININGTRTP LYVFPCPWFF PHFDNGNGLQ  360
PQSSCPENKQ KGAFFNNQYS ASSSSRSVAQ LDNYQSAFPV RLDTEASGSR EARPRTDLHE  420
TPAQFPLDGG DHYTVFHPKE NGSKEIFLSP LLNHGRVAST IKHENGLESD YSANTEKSLT  480
ASHTFSALPE KNSEPIIYPN RKIADAIAAA EARKRRKKLT KLKNLHGRQC RMQC

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	220	248	KRKKELALKQYQSLEETNRLLKVQMAKAK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G19490.1	5e-51	bZIP family protein