PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ro06_G11372 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 219aa MW: 24496.2 Da PI: 6.2529 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 66.4 | 2.8e-21 | 29 | 77 | 1 | 49 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 k+ien+s rqvtfskR+ g++KKA+E+ + C +ev v++fs++gk + y Ro06_G11372 29 KKIENDSERQVTFSKRKSGVFKKASEMATICSTEVGVVVFSESGKPFSY 77 68******************************************96665 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 219 aa Download sequence |
MGDIIALREF NLTMEGEKKT KGRQKIEIKK IENDSERQVT FSKRKSGVFK KASEMATICS 60 TEVGVVVFSE SGKPFSYGNP SIESVAHRFI QQQQNQNQND DAHFMIEAHH QARVDGIIRM 120 HNELESQLEV DRYRSKELQE RERAKASEDQ GGPGWWNQPI EGLDLAGLKQ MYASYERLHN 180 DLYSYLSNTT SAGTSSSGCT VGIPSALPPG FGYGSNDGQ |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04100.1 | 6e-35 | M-type_MADS family protein |