PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ro06_G11106 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 227aa MW: 25596 Da PI: 9.088 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 62.5 | 4.6e-20 | 39 | 87 | 1 | 49 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 k++e++s+r+vtfskR++g++ KA ELS+L++ae + i+fs +gk++ + Ro06_G11106 39 KKVEDTSRRYVTFSKRKKGLFNKAAELSILTGAETLAIVFSGKGKMFSF 87 6789******************************************987 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 227 aa Download sequence |
MAAQNNNNPH PSPVAEPNDN NVLPPPVKKT KGRRRVDMKK VEDTSRRYVT FSKRKKGLFN 60 KAAELSILTG AETLAIVFSG KGKMFSFGGS SCDAVIQRYL AETNPEAAVE PVHHSKNDAA 120 NSELLVSTRQ QYFEAMRLLE EEKRRGEMIQ RRKEAAGVVG PAEFFLEEID RAVSWEDLER 180 LKGKAETRSQ EMIMHRQCSF TSLMDGRVVM AENYTNNNDN TISMNNI |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 53 | 83 | KRKKGLFNKAAELSILTGAETLAIVFSGKGK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36590.1 | 3e-16 | M-type_MADS family protein |