PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro06_G11033
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family GRAS
Protein Properties Length: 780aa    MW: 84894.1 Da    PI: 6.4785
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro06_G11033genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS418.65.3e-1284087672374
         GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                   +lLl+cAeavs++++e+a+++L ++sel++p g++ qR+aayf eA++arl++s+ ++y++lp+s+++ ++s++ ++a+++f+ +sP++kfsh+taN
  Ro06_G11033 408 LTLLLQCAEAVSADNFEEATKMLLEISELSTPFGTSAQRVAAYFSEAMSARLVSSCLGIYASLPVSAAPITHSQKLVSAFQVFNGISPFVKFSHFTAN 505
                  579*********************************************************************************************** PP

         GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvk 197
                  qaI ea+e+e+rvHi+D+di+qGlQWp L++ LasRp+gpp +R+Tg+g     s e+le+tg+rL++fA++lg+pfef + va+++ +l++e+L+++
  Ro06_G11033 506 QAIQEAFEREDRVHIVDLDIMQGLQWPGLFHILASRPGGPPYVRLTGLGT----SMEALEATGKRLTDFADKLGLPFEFFP-VAEKVGSLDPERLNIS 598
                  **************************************************....***************************.7*************** PP

         GRAS 198 pgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreiv 295
                  ++Ea+aV++    h+l+d ++s ++    +L+l+++l Pkvv+vveq+++h ++sFl rf+ea++yysalfdsl a++++eseer++vE++ll+rei+
  Ro06_G11033 599 KREAVAVHWLQ--HSLYDVTGSDAN----TLWLLQRLAPKVVTVVEQDLSH-AGSFLGRFVEAIHYYSALFDSLGASYGEESEERHVVEQQLLSREIR 689
                  **********9..999999999999....**********************.899******************************************* PP

         GRAS 296 nvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  nv+a  g +r  + + +++Wre+++++GF+ ++l  +aa+qa lll +++sdgy++ e++g+l lgWkd  L+++SaWr
  Ro06_G11033 690 NVLAVGGPSRSGEVK-FHNWREKFQQSGFRGISLAGNAATQATLLLGMFPSDGYTLVEDNGTLKLGWKDLCLLTASAWR 767
                  *********888776.**************************************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 780 aa     Download sequence    
MAACALLGDN GDHVSGNGSN NNSQSPSLNS NSQGSSAEQN PARSKMVRKR MASEIEVNNS  60
LRSNNNNNGG DNYMRISRNR SVMLNPNPTH DGSNKLVNMV SNYSTTMLNL PSSTNLTTLM  120
TSGGGVLSTA SPSSSSHPNW GPIDPLTLHH PIQTQIATTP PPAVCGFSGL PLFPPERSTT  180
TSSPGIAPPA SIVSMDQDSS ATAWIDGIIK DLIHSSTSVS IPQLIHNVRE IIFPCNPNLA  240
SLLEYRLRSI SDPPPPPPPI QAFNNRRRDQ GPGLKLNLDS NSGLNDVALF PSSTDTNSHH  300
VMNHDLYLNW GATLPQQHQQ PNPTSTPTCN ESNIQLQQHH IAQVVHPQQQ TLDKQQQQNS  360
SSSAAAETTQ TTAATTTTAT TPSPAVLMRE KKEEMRQQKR DEEGLHLLTL LLQCAEAVSA  420
DNFEEATKML LEISELSTPF GTSAQRVAAY FSEAMSARLV SSCLGIYASL PVSAAPITHS  480
QKLVSAFQVF NGISPFVKFS HFTANQAIQE AFEREDRVHI VDLDIMQGLQ WPGLFHILAS  540
RPGGPPYVRL TGLGTSMEAL EATGKRLTDF ADKLGLPFEF FPVAEKVGSL DPERLNISKR  600
EAVAVHWLQH SLYDVTGSDA NTLWLLQRLA PKVVTVVEQD LSHAGSFLGR FVEAIHYYSA  660
LFDSLGASYG EESEERHVVE QQLLSREIRN VLAVGGPSRS GEVKFHNWRE KFQQSGFRGI  720
SLAGNAATQA TLLLGMFPSD GYTLVEDNGT LKLGWKDLCL LTASAWRPPF HATTNPNLHY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54220.10.0GRAS family protein