PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro06_G09907
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family C2H2
Protein Properties Length: 194aa    MW: 21710.9 Da    PI: 6.308
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro06_G09907genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.40.000233052123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 y C+ C++ Fs+   L  H++ H
  Ro06_G09907 30 YACTFCKRGFSNAQALGGHMNIH 52
                 89*******************99 PP
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    
MERNHSVEKF DQIKWTSEDQ ISGSGKAKSY ACTFCKRGFS NAQALGGHMN IHRRDRARIR  60
QYSEDQNQLS SDEVKNSSHA AHHDPARANN SKDKTQSQLE MKGINMIPRK SSYPFSTRSE  120
DHEIVVHAGN KGKIGSSEDA QEQLQLPLFL EEPVLASDNL AGYTNGCGGV EELDLELRLG  180
PETPETTLST REFF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53820.12e-16C2H2 family protein