PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro06_G09251
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family FAR1
Protein Properties Length: 539aa    MW: 61004.9 Da    PI: 7.4415
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro06_G09251genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR186.53.9e-27134222291
         FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                  fYn+YA +vGF++r++  ++s+ +g+++ rt+vC+keg+r  +k++ +k+ r+r+ tr+gCka++ +kk ++g+w+v+k+++eH H+l+p
  Ro06_G09251 134 FYNAYALRVGFRTRVNDLSRSRVDGSVIARTLVCNKEGYRVADKRD-RKSIRPRPPTRVGCKAMISMKKLSNGNWVVAKFVKEHAHSLTP 222
                  9*****************************************9999.999*************************************975 PP
2FAR190.72e-28372459290
         FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                  fYn Y+ ++GF++r+++ ++sk++g+i+ rtfvCskeg+r++++++ +k+ ++ra tr+gC a+l +kk + gkw+vtk+ +eHnH+l 
  Ro06_G09251 372 FYNVYGLRMGFNTRMNYLSRSKHDGTIIARTFVCSKEGYRKPDRRD-KKTINPRAPTRVGCMAMLSIKKLNIGKWVVTKFIKEHNHALI 459
                  9******************************************999.99*************************************995 PP
Sequence ? help Back to Top
Protein Sequence    Length: 539 aa     Download sequence    
MACSKLATHD ITCNVYVFGF RETKAETETE TEPNTSAAVA FDLEKGLKSQ LELWALPPVD  60
SGIDTQPQNG LLDKSADVEL RLNNDDAILG TSVEEVSHIG QIEQVGQNSA SMEVEGDEPY  120
VGQEFESEAA AHAFYNAYAL RVGFRTRVND LSRSRVDGSV IARTLVCNKE GYRVADKRDR  180
KSIRPRPPTR VGCKAMISMK KLSNGNWVVA KFVKEHAHSL TPGKSQNGLN DESSDEQMKI  240
KELTQQLLVE RKRSASYRKI IDLLFTHIDD HTQHLSQKIL RTWHPLKEKE KAAMDSVLDI  300
NVNDVVSNGS TDAEFKPCND GALVGSSFQK MPHIVQNDER TQNSSKDGSH VVEVDEPYVG  360
QEFDTEVNAQ AFYNVYGLRM GFNTRMNYLS RSKHDGTIIA RTFVCSKEGY RKPDRRDKKT  420
INPRAPTRVG CMAMLSIKKL NIGKWVVTKF IKEHNHALIA SKRPKGLIED QIPDDKTKIE  480
ELTRELFLER ERSASLRKVI DLLFDHIEEH TQDLSKKVQY VVDKVKEIES EGKNRRDLR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G59470.25e-58FAR1 family protein