PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro06_G09104

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

C2H2

Protein Properties

Length: 506aa MW: 54534.8 Da PI: 9.0297

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro06_G09104	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.2	3.1e-05	89	111	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++C+k F r nL+ H r H Ro06_G09104 89 FICEICNKGFQRDQNLQLHRRGH 111 89*******************88 PP
2	zf-C2H2	12.7	0.00038	165	187	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + +s+ k H +t+ Ro06_G09104 165 WKCEKCSKKYAVQSDWKAHSKTC 187 58*****************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 506 aa Download sequence
MKALLFQQQQ VDETMSNLTS ASGDQASVSS GNRSTEIGTS SFSQQYFPPP PPQASTPGVK 60 RKRNQPGNPD PDAEVIALSP KTLMATNRFI CEICNKGFQR DQNLQLHRRG HNLPWKLKQR 120 TSKEVRKKVY VCPEASCVHH DPSRALGDLT GIKKHFFRKH GEKKWKCEKC SKKYAVQSDW 180 KAHSKTCGTR EYRCDCGTLF SRRDSFITHR AFCDALAEES ARAINPAATP ANPLFSSQQS 240 QSHMAGGPHI NFNPHGQDLH AYNTALMKKE HNDQQISSFS STTSLLPPWL AAGPPPNTIF 300 SGNHNFQQNL ELGPNPNPSA GPTLPQFQVP AALSSPPHMS ATALLQKAAQ MGATMSSSTS 360 ASVSVPAGIM TRAHHQGHVS DFGGHVSAAT AGVHLHHQQQ QQATSLLHDM MNSLSSGTAG 420 FEGTSFEDAF GGILGNSKSN KDGAADENGG GHGAAGEGLT RDFLGLRALS PSDMLNIAGL 480 GNCVTTNTTS TRDSQNQVPQ KPNWQG

Sequence ? help Back to Top

Protein Sequence Length: 506 aa Download sequence

MKALLFQQQQ VDETMSNLTS ASGDQASVSS GNRSTEIGTS SFSQQYFPPP PPQASTPGVK  60
RKRNQPGNPD PDAEVIALSP KTLMATNRFI CEICNKGFQR DQNLQLHRRG HNLPWKLKQR  120
TSKEVRKKVY VCPEASCVHH DPSRALGDLT GIKKHFFRKH GEKKWKCEKC SKKYAVQSDW  180
KAHSKTCGTR EYRCDCGTLF SRRDSFITHR AFCDALAEES ARAINPAATP ANPLFSSQQS  240
QSHMAGGPHI NFNPHGQDLH AYNTALMKKE HNDQQISSFS STTSLLPPWL AAGPPPNTIF  300
SGNHNFQQNL ELGPNPNPSA GPTLPQFQVP AALSSPPHMS ATALLQKAAQ MGATMSSSTS  360
ASVSVPAGIM TRAHHQGHVS DFGGHVSAAT AGVHLHHQQQ QQATSLLHDM MNSLSSGTAG  420
FEGTSFEDAF GGILGNSKSN KDGAADENGG GHGAAGEGLT RDFLGLRALS PSDMLNIAGL  480
GNCVTTNTTS TRDSQNQVPQ KPNWQG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	116	128	KLKQRTSKEVRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G55110.1	1e-111	C2H2 family protein