PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ro06_G09078 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
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Family | NAC | ||||||||
Protein Properties | Length: 178aa MW: 20512.8 Da PI: 6.1203 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 73.1 | 7.2e-23 | 9 | 153 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykv.ePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgy..Wkatgkdkevlsk 95 lp+G+rF+Pt++el+ +yL +kv+g +l + +++ e+d+y e w+ ++++e+++yfF++ ++k+ +++r r+t+sg W+++ + k++ Ro06_G09078 9 LPVGYRFEPTEQELLLYYLYNKVNGAQLAC-NAVMECDLYGEeEAWRQ-LFHQTDERSLYFFTNLKNKTDNDSRIGRTTSSGCatWRNQNE-KPIRYD 103 799************************999.8899****987244543.2456788899*********************99766*98866.777775 PP NAM 96 ......kgel.......vglkktLvfy......kgrapkgektdWvmheyrl 128 + + +g k+t+ + + ++ kg Wvmhe+rl Ro06_G09078 104 gnvsdgD--DqrnemtlIGFKRTFSYVpkkkgsTSTRAKGGGHGWVMHEFRL 153 4555541..04566677**********87754434555666789******98 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 178 aa Download sequence |
MENAWNFELP VGYRFEPTEQ ELLLYYLYNK VNGAQLACNA VMECDLYGEE EAWRQLFHQT 60 DERSLYFFTN LKNKTDNDSR IGRTTSSGCA TWRNQNEKPI RYDGNVSDGD DQRNEMTLIG 120 FKRTFSYVPK KKGSTSTRAK GGGHGWVMHE FRLAGCLLNN DQIGYMLHNG VEEIRNGA |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G10490.1 | 2e-15 | NAC family protein |