PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro06_G08427

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

FAR1

Protein Properties

Length: 1668aa MW: 188241 Da PI: 6.8092

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro06_G08427	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	83.1	4.6e-26	161	264	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.............tekerrtraetrtgCkaklkvkkekdgkwevtkleleH 85 +fY+eYA+++GF++ +++s++sk+++e+++++f Cs++g+++e +k+ e++ +r+ ++t+Cka+++vk++ dgkw+++++++eH Ro06_G08427 161 SFYQEYARSMGFNTAIQNSRRSKTSREFIDAKFACSRYGTKREYDKTynnkprarqnkqdPENATGRRSCSKTDCKASMHVKRRPDGKWVIHNFVKEH 258 5****************************************999999999988766554555559999************************ PP FAR1 86 nHelap 91 nHel p Ro06_G08427 259 NHELLP 264 *975 PP
2	FAR1	87.5	1.9e-27	696	783	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 +fY+eYAk++GF++++++s++sk+++e+++++f Cs++g + e+++ ++r+ ++++t+Cka+++vkk+ dgkw ++++ +eHnHel p Ro06_G08427 696 SFYQEYAKSMGFTTSIKNSRRSKKSKEFIDAKFACSRYGVTPESDSG---TSRRPTVKKTDCKASMHVKKRADGKWIIHEFIKEHNHELLP 783 5**************************************999888...7788889*****************************975 PP
3	FAR1	66.1	9.1e-21	1190	1274	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +Y+eYA++vGF +++ +s++sk++g++++ ++ Cs++ k++ ++ ++ + tgCka l++kk++++kw+++++++eHnHe++ Ro06_G08427 1190 CYREYARSVGFGITIIASRRSKKSGKFIDIKLACSRYRKQDCGATD----YQRIPLMSTGCKAGLQMKKRENEKWYIHSFVKEHNHEMS 1274 7**************************************99888....8889999****************************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 1668 aa Download sequence
MYRDRVLSLN TRTGMLFQSS RINALVFVSM SLKGGNIIFF CLLSSQPKLY NSVKIPWEIF 60 SDDHQLKLNN LTMDIDLRLP SGDHDKEDEE PNAIDNMLEH EEKLHNGDIE SAHIVDVRDE 120 VHAEDGGDLN SPTADMVIFK EDTNLEPLFG MEFESHGEAY SFYQEYARSM GFNTAIQNSR 180 RSKTSREFID AKFACSRYGT KREYDKTYNN KPRARQNKQD PENATGRRSC SKTDCKASMH 240 VKRRPDGKWV IHNFVKEHNH ELLPAQAVSE QTRKMYAAMA RQFAEYKNVV GLKNDPKNPF 300 DKDSDMWNKQ PTTKSPSPLE KSVSLIYTPS VLKKFQVEVL GAIGCNPKKE RQDEMSTTSR 360 VHDCEKNQDF TVAWNEMKLE VSCSCCLFEY KGYLCRHALI VLQMCQIGSI PAQYILKRWT 420 KDAKSRHFVV EESDHVPSRV QKYDDLSQRA MKLIAEGSLS QESYSIACRA LEEAFGNCMG 480 VNNSSKSQIE AGTSATQGLP CIEDDNQNRS NGKGIKKKNP TKKRKVNSEP EVMTVGAQDS 540 LQQMDKLSSR AITIDGYYGG QQSVQGMVQL NLMAPTRDNY YGNQQTIQGL GQLNSIAPSH 600 EGYYNAQQSM HGLGQMDFFR TDRNQRLVET LVDGQDNMND GRVNENMNMV PVVEEAQNSG 660 GGIISSPKRD IQVFEGDADF EPCNGIEFES HEAAYSFYQE YAKSMGFTTS IKNSRRSKKS 720 KEFIDAKFAC SRYGVTPESD SGTSRRPTVK KTDCKASMHV KKRADGKWII HEFIKEHNHE 780 LLPALAYHFR IHRNVKLAEK NNMDILQAVS ERTRKMYVEM SRQSVFRKFQ VEVLGVVGCQ 840 PKKEHEDGLT TTFRVQDCEK EEYFMVTWTE TKAIELSEEG SSSEETYNIA FRTLVEALKN 900 CVNVNNSNNT VVDLSSSVHG IREAEEENQG SLAAKPTRKR NTNRKRKVQA EQDVMLGEAQ 960 DSLQQMDNLS SDGIALNGYY GAQHGLVQLN LMEPPHDSYY VNQESMQGLG QLNSIGPSDD 1020 GFFGTQQIHG LGQLDFRPSS SFSYSLQIDL ELPSCEQDKL DTRSDKDVNI LDAADEINVE 1080 KNSEHVKEAH GLSANKSVSD LQDQDVVNNV EVNVVNKGVV NISDAINEIN VEQSSELVKE 1140 AHGLGANKSV SDFRDQDDVN NVPVNVVDKG VVCEPENGLE FETKEDAYSC YREYARSVGF 1200 GITIIASRRS KKSGKFIDIK LACSRYRKQD CGATDYQRIP LMSTGCKAGL QMKKRENEKW 1260 YIHSFVKEHN HEMSDGFINA LGGRNQRPAI VAYQKKANMA FEAQHKQSGL RSLSPIEKQM 1320 STMYTDAIFR KFQVEVLGVA SCHSQKEGED EATVIFRVDD LEEHQNFIVA LNEPELRVCC 1380 LCHSFEYKGF LCRHAILVLQ LSGVSRIPSH YILKRWTKDA KLRHTVSAVS KRLNYRVQRF 1440 NDLCKLAIKL GEEGSLSPET YQIAFQALEE VLKQCVNVNN SVKGVSEPNV SSIHGSNDVE 1500 EGNYSGGTIK LCKKKKTHKK RKGQTDPDGI PIRLQDSCQQ MELMNSRDHS LDNCYIPQQE 1560 LQGELGSRGR APDSCYGAQQ SMQETRRLNS VSLIHDGYYG NQLASQGHLH SLQSRVGQQS 1620 MQGMGQLGFR APGVHSCFDI TDTLKDMEQS VGSSRFHDNA SKHPHNKH

Sequence ? help Back to Top

Protein Sequence Length: 1668 aa Download sequence

MYRDRVLSLN TRTGMLFQSS RINALVFVSM SLKGGNIIFF CLLSSQPKLY NSVKIPWEIF  60
SDDHQLKLNN LTMDIDLRLP SGDHDKEDEE PNAIDNMLEH EEKLHNGDIE SAHIVDVRDE  120
VHAEDGGDLN SPTADMVIFK EDTNLEPLFG MEFESHGEAY SFYQEYARSM GFNTAIQNSR  180
RSKTSREFID AKFACSRYGT KREYDKTYNN KPRARQNKQD PENATGRRSC SKTDCKASMH  240
VKRRPDGKWV IHNFVKEHNH ELLPAQAVSE QTRKMYAAMA RQFAEYKNVV GLKNDPKNPF  300
DKDSDMWNKQ PTTKSPSPLE KSVSLIYTPS VLKKFQVEVL GAIGCNPKKE RQDEMSTTSR  360
VHDCEKNQDF TVAWNEMKLE VSCSCCLFEY KGYLCRHALI VLQMCQIGSI PAQYILKRWT  420
KDAKSRHFVV EESDHVPSRV QKYDDLSQRA MKLIAEGSLS QESYSIACRA LEEAFGNCMG  480
VNNSSKSQIE AGTSATQGLP CIEDDNQNRS NGKGIKKKNP TKKRKVNSEP EVMTVGAQDS  540
LQQMDKLSSR AITIDGYYGG QQSVQGMVQL NLMAPTRDNY YGNQQTIQGL GQLNSIAPSH  600
EGYYNAQQSM HGLGQMDFFR TDRNQRLVET LVDGQDNMND GRVNENMNMV PVVEEAQNSG  660
GGIISSPKRD IQVFEGDADF EPCNGIEFES HEAAYSFYQE YAKSMGFTTS IKNSRRSKKS  720
KEFIDAKFAC SRYGVTPESD SGTSRRPTVK KTDCKASMHV KKRADGKWII HEFIKEHNHE  780
LLPALAYHFR IHRNVKLAEK NNMDILQAVS ERTRKMYVEM SRQSVFRKFQ VEVLGVVGCQ  840
PKKEHEDGLT TTFRVQDCEK EEYFMVTWTE TKAIELSEEG SSSEETYNIA FRTLVEALKN  900
CVNVNNSNNT VVDLSSSVHG IREAEEENQG SLAAKPTRKR NTNRKRKVQA EQDVMLGEAQ  960
DSLQQMDNLS SDGIALNGYY GAQHGLVQLN LMEPPHDSYY VNQESMQGLG QLNSIGPSDD  1020
GFFGTQQIHG LGQLDFRPSS SFSYSLQIDL ELPSCEQDKL DTRSDKDVNI LDAADEINVE  1080
KNSEHVKEAH GLSANKSVSD LQDQDVVNNV EVNVVNKGVV NISDAINEIN VEQSSELVKE  1140
AHGLGANKSV SDFRDQDDVN NVPVNVVDKG VVCEPENGLE FETKEDAYSC YREYARSVGF  1200
GITIIASRRS KKSGKFIDIK LACSRYRKQD CGATDYQRIP LMSTGCKAGL QMKKRENEKW  1260
YIHSFVKEHN HEMSDGFINA LGGRNQRPAI VAYQKKANMA FEAQHKQSGL RSLSPIEKQM  1320
STMYTDAIFR KFQVEVLGVA SCHSQKEGED EATVIFRVDD LEEHQNFIVA LNEPELRVCC  1380
LCHSFEYKGF LCRHAILVLQ LSGVSRIPSH YILKRWTKDA KLRHTVSAVS KRLNYRVQRF  1440
NDLCKLAIKL GEEGSLSPET YQIAFQALEE VLKQCVNVNN SVKGVSEPNV SSIHGSNDVE  1500
EGNYSGGTIK LCKKKKTHKK RKGQTDPDGI PIRLQDSCQQ MELMNSRDHS LDNCYIPQQE  1560
LQGELGSRGR APDSCYGAQQ SMQETRRLNS VSLIHDGYYG NQLASQGHLH SLQSRVGQQS  1620
MQGMGQLGFR APGVHSCFDI TDTLKDMEQS VGSSRFHDNA SKHPHNKH

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	1513	1518	KKKKTH
2	1514	1519	KKKKTH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22170.2	1e-123	FAR1 family protein