PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro06_G08227

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

CPP

Protein Properties

Length: 690aa MW: 76152.7 Da PI: 6.644

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro06_G08227	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	46.2	8.7e-15	432	469	3	40
TCR 3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 +k+CnC++s+Clk+YCeCfaag +C e C+C dC+Nk+ Ro06_G08227 432 CKRCNCRRSECLKLYCECFAAGLYCIEPCSCYDCFNKN 469 89**********************************97 PP
2	TCR	31.5	3.5e-10	516	539	1	24
TCR 1 kekkgCnCkkskClkkYCeCfaag 24 ++k+gCnCkks ClkkYCeCf+ Ro06_G08227 516 RHKRGCNCKKSICLKKYCECFQGA 539 589******************976 PP

Sequence ? help Back to Top
Protein Sequence Length: 690 aa Download sequence
MDTPLKNQTT LSPLASKIQE SPVSNYISNL SPIEHVKSIR NDHTFNSLTF ASPPYGFTPP 60 RIVSPSETNF LQKRYHFSEA SKPEVSENSA CEGDSVVSEQ LECSVPTENL ELAVELPNTS 120 KLSYGSPESD AELMDATNAV AAPESIVQSV IHQSKGGHSS FEREAHLRRI CRAGFDWEML 180 ISDATDLLNF DSPTIEENYA EEVPKTVDPA VMTFISNILL DNHNDTEMTE SVGPIDFSEQ 240 CELEKFSTSI RNLDDKRQKC IPPSRKATSQ SHTIHRRCLV FEKAETHKKK LISDSSGSCP 300 VSLQSNCEAL TVEKELIQNT TGTGSAYSSA RLPGLGLHLN ALATTSETNS ESQVLNMPNA 360 KICYSSFTPG EDSRDEASSL SYLEEVSVAC KNGAHVAEST PQTCKRFFEE SEHPSPKRKR 420 FKSKHVGESG ACKRCNCRRS ECLKLYCECF AAGLYCIEPC SCYDCFNKNI HVDIVQETRR 480 LIELRNPLAF APKVIGSTEA VSQFGEETNS TPASARHKRG CNCKKSICLK KYCECFQGAK 540 NTFGRKGVQV ILLLYPIGGL GAEETEVEGQ SGVCEKNHTT IPSEICRPPP DQRPATDLNC 600 RIKQISLHSG LSSFPRLEKH LHAIPEDETL ETLDRPSLAQ PRPIVVKSAS PNSKRVSPPH 660 SHSRIEFGSL NSWKGGRKLT LRSVLPFASL

Sequence ? help Back to Top

Protein Sequence Length: 690 aa Download sequence

MDTPLKNQTT LSPLASKIQE SPVSNYISNL SPIEHVKSIR NDHTFNSLTF ASPPYGFTPP  60
RIVSPSETNF LQKRYHFSEA SKPEVSENSA CEGDSVVSEQ LECSVPTENL ELAVELPNTS  120
KLSYGSPESD AELMDATNAV AAPESIVQSV IHQSKGGHSS FEREAHLRRI CRAGFDWEML  180
ISDATDLLNF DSPTIEENYA EEVPKTVDPA VMTFISNILL DNHNDTEMTE SVGPIDFSEQ  240
CELEKFSTSI RNLDDKRQKC IPPSRKATSQ SHTIHRRCLV FEKAETHKKK LISDSSGSCP  300
VSLQSNCEAL TVEKELIQNT TGTGSAYSSA RLPGLGLHLN ALATTSETNS ESQVLNMPNA  360
KICYSSFTPG EDSRDEASSL SYLEEVSVAC KNGAHVAEST PQTCKRFFEE SEHPSPKRKR  420
FKSKHVGESG ACKRCNCRRS ECLKLYCECF AAGLYCIEPC SCYDCFNKNI HVDIVQETRR  480
LIELRNPLAF APKVIGSTEA VSQFGEETNS TPASARHKRG CNCKKSICLK KYCECFQGAK  540
NTFGRKGVQV ILLLYPIGGL GAEETEVEGQ SGVCEKNHTT IPSEICRPPP DQRPATDLNC  600
RIKQISLHSG LSSFPRLEKH LHAIPEDETL ETLDRPSLAQ PRPIVVKSAS PNSKRVSPPH  660
SHSRIEFGSL NSWKGGRKLT LRSVLPFASL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22780.1	2e-96	CPP family protein