PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro06_G08204

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

GeBP

Protein Properties

Length: 410aa MW: 44864.6 Da PI: 4.3975

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro06_G08204	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	119.5	1.8e-37	117	215	2	97
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgk...spsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiW 96 lfqrlw++eDei lLqG++d+++++g s ++d+ fy+++k++++++++k+qlveK+rrLKkK+++ +k++sgke+sf+++hdq +fe+s+kiW Ro06_G08204 117 LFQRLWTDEDEIELLQGFLDYTTQRGNkggSHQNDTALFYDQIKSKLQLEFNKNQLVEKLRRLKKKYRNVLNKIASGKEVSFKSPHDQATFEISRKIW 214 79*********************998845555************************************************************** PP DUF573 97 g 97 Ro06_G08204 215 S 215 6 PP

Sequence ? help Back to Top
Protein Sequence Length: 410 aa Download sequence
MAPDQDDAVL PQGDFSSSSQ DDEEEDDVVD EDEDEDVDVD EDDDVINSAS PSTSTSLPVA 60 IATPTVTVAL PAPMATPTAV ISDASDPKRP RTIQYDPVLL PQPEEKKPAT LDDSRRLFQR 120 LWTDEDEIEL LQGFLDYTTQ RGNKGGSHQN DTALFYDQIK SKLQLEFNKN QLVEKLRRLK 180 KKYRNVLNKI ASGKEVSFKS PHDQATFEIS RKIWSNIARI GVGPEDNALD DEDPNNPNFN 240 NFEIKTEDAA GILAIADKKS TPKSRKRSRP QAQQKPPSFI DQAPVMKENH NFNNGSGGGG 300 GGGNNCSNCN VQGLIEETVK SCLSPLFKEL LSNSMGGGQS RGFGGLSLNP IPLSFGGPSM 360 NLNFGGGEAA DDQWRKQQIL ELEVYSKRLE LVQNQIKVAL DELRSTGGGG

Sequence ? help Back to Top

Protein Sequence Length: 410 aa Download sequence

MAPDQDDAVL PQGDFSSSSQ DDEEEDDVVD EDEDEDVDVD EDDDVINSAS PSTSTSLPVA  60
IATPTVTVAL PAPMATPTAV ISDASDPKRP RTIQYDPVLL PQPEEKKPAT LDDSRRLFQR  120
LWTDEDEIEL LQGFLDYTTQ RGNKGGSHQN DTALFYDQIK SKLQLEFNKN QLVEKLRRLK  180
KKYRNVLNKI ASGKEVSFKS PHDQATFEIS RKIWSNIARI GVGPEDNALD DEDPNNPNFN  240
NFEIKTEDAA GILAIADKKS TPKSRKRSRP QAQQKPPSFI DQAPVMKENH NFNNGSGGGG  300
GGGNNCSNCN VQGLIEETVK SCLSPLFKEL LSNSMGGGQS RGFGGLSLNP IPLSFGGPSM  360
NLNFGGGEAA DDQWRKQQIL ELEVYSKRLE LVQNQIKVAL DELRSTGGGG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04930.2	4e-62	GeBP family protein