PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro06_G07582
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family Dof
Protein Properties Length: 297aa    MW: 32576 Da    PI: 7.1219
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro06_G07582genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof110.77.2e-351872761
       zf-Dof  7 kcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61
                 +cprC  +ntkfCyynnysl+qPryfCk+CrryWtkGG+lrnvPvGgg+rkn++ 
  Ro06_G07582 18 NCPRCGCSNTKFCYYNNYSLTQPRYFCKGCRRYWTKGGSLRNVPVGGGCRKNRRG 72
                 7***************************************************985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    
MERSGWKPND DHHHICPNCP RCGCSNTKFC YYNNYSLTQP RYFCKGCRRY WTKGGSLRNV  60
PVGGGCRKNR RGSRSLRLST NTATGDGRNN VHSGTVGRNS YGISSLAPDS TSSGVANQDA  120
PPRIDLAVVY ANFLNQKPDS KSSGSDQLPE LPGEFDPGLD FSSCIANMNI NAGSASSVQL  180
MEENRLIRSL GCHTLSENCG TVNDHMYFGG LDPLINHHQK HQDHSSDQYA SSTHESTDFG  240
LPPLPGQEVL WSSSHDQMMV SPNMQPTPVL GPEAHDPNLL NWSPIFDLPC NGTFSRT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G52440.13e-42Dof family protein