PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro06_G07566
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family NF-YA
Protein Properties Length: 317aa    MW: 35399.8 Da    PI: 9.74
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro06_G07566genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA96.43.2e-30148203258
    CBFB_NFYA   2 eplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                   p+YVNaKQy++I++RRq+Rak+  e+k  ++ rkpy+heSRh hA+rRpRg+gGrF
  Ro06_G07566 148 GPIYVNAKQYHGIIRRRQSRAKAFMENKA-ARLRKPYMHESRHLHAMRRPRGCGGRF 203
                  69***************************.**************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    
MATQTFYFKE HEGLGQLSSV LPWLGAFGSQ QVYGESYGQS KPFNMELPNS GHQFTATKQH  60
ERGIEQGLDK GNTNQFTNFP GDAQKSQAAI SLQSSQPKYR GHFELGFSQP MFCAKYPYMD  120
QCYGLFSSYG PQVSGRIMLP LSLTTDEGPI YVNAKQYHGI IRRRQSRAKA FMENKAARLR  180
KPYMHESRHL HAMRRPRGCG GRFLNTKTSN NGKSGNEMKQ VGDVQLFRHS GSQSSEVLQS  240
ESGTLNSSKE TNGSSSNISG SEVTSMYSTR VDLDRFSINY LDSTVHSLSQ HIIDRARGMV  300
MPMKLIAAVD NCCNIKV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06510.25e-66NF-YA family protein