PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro06_G07507
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family NF-YA
Protein Properties Length: 305aa    MW: 34354.1 Da    PI: 9.9582
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro06_G07507genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA67.92.5e-21148194858
    CBFB_NFYA   8 aKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                  aKQy++I++RRq+R+k+    +l    rkpy+heSRh hA+rRpRg+gG F
  Ro06_G07507 148 AKQYHGIIRRRQSREKALIAARL----RKPYMHESRHLHAMRRPRGCGGHF 194
                  9****************998888....**********************99 PP
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    
MAMQTVYFKE PEGLGQLSSE LPWLGAFGSQ QVYGKSYGQS KPFTMELPNS GHQLTATKQH  60
ERGMEQGLDK GNTNQFTIFP GDAQKSQAAI SLQSSQPKFR GHFELGFRHS ASLFVQNIRT  120
WINVMDSFPH MDLKFWCMKD PYMSMLIAKQ YHGIIRRRQS REKALIAARL RKPYMHESRH  180
LHAMRRPRGC GGHFLNTKTS NNGKSGNEMK QVGDVQLFRQ SGSQSSEVLQ SESGTLNSSK  240
ETNGSSSNIS GSEVISMYFR VDRFSINHLN STVHCLSQHM IDSACGMVMP MKWNAAVDNC  300
CNLKV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06510.22e-38NF-YA family protein