PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro06_G06172

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

C2H2

Protein Properties

Length: 461aa MW: 50629.9 Da PI: 10.5205

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro06_G06172	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11	0.0013	86	108	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg Fs L H+r+H Ro06_G06172 86 HECSICGLEFSLGQALGGHMRKH 108 78********************9 PP
2	zf-C2H2	16.2	2.9e-05	251	273	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg+ Fs+ L H+r+H Ro06_G06172 251 HECSICGREFSSGQALGGHMRKH 273 78********************9 PP
3	zf-C2H2	13.8	0.00017	373	395	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg+ Fs L H+r+H Ro06_G06172 373 HECSICGREFSLGQALGGHMRKH 395 78********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 461 aa Download sequence
MRDQGVMGLD MAKCLMLLSC RLETKFKKCS SSPNDVFECK TCKRQFPSFQ ALGGHRASHK 60 RPRTLTGSDQ DPKSETKLVQ SKPKKHECSI CGLEFSLGQA LGGHMRKHRM MNAGFSSSYP 120 VPSAAVAVAS KIPVLMRSNS KRVMCLDMDL NLTPLENDLK VLFGNMAPKR TREEVVGVDM 180 AKVLMLLSCS LEKCSSSPND VFECKTCNRQ FPSFQALGGH RASHKRQRTL MDIDQDPKNE 240 TKLGQSKPKK HECSICGREF SSGQALGGHM RKHRMLNVGF SSSVAAAATV AGASKIPVLM 300 RSNSKRVMLE TNFKKCSSSP NDVFGCKTCK RQFPSFQALG GHRASHKRPR TLTGSDQDPK 360 SEIKMAQSKP KKHECSICGR EFSLGQALGG HMRKHRMLNV GFSSSVAAAA TVAGASKIPV 420 LMRSNSKRVM CLDMDLNLTP LENDLKLLFG NMAPKVDTGR P

Sequence ? help Back to Top

Protein Sequence Length: 461 aa Download sequence

MRDQGVMGLD MAKCLMLLSC RLETKFKKCS SSPNDVFECK TCKRQFPSFQ ALGGHRASHK  60
RPRTLTGSDQ DPKSETKLVQ SKPKKHECSI CGLEFSLGQA LGGHMRKHRM MNAGFSSSYP  120
VPSAAVAVAS KIPVLMRSNS KRVMCLDMDL NLTPLENDLK VLFGNMAPKR TREEVVGVDM  180
AKVLMLLSCS LEKCSSSPND VFECKTCNRQ FPSFQALGGH RASHKRQRTL MDIDQDPKNE  240
TKLGQSKPKK HECSICGREF SSGQALGGHM RKHRMLNVGF SSSVAAAATV AGASKIPVLM  300
RSNSKRVMLE TNFKKCSSSP NDVFGCKTCK RQFPSFQALG GHRASHKRPR TLTGSDQDPK  360
SEIKMAQSKP KKHECSICGR EFSLGQALGG HMRKHRMLNV GFSSSVAAAA TVAGASKIPV  420
LMRSNSKRVM CLDMDLNLTP LENDLKLLFG NMAPKVDTGR P

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28710.1	4e-32	C2H2 family protein