PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro06_G06136
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family Dof
Protein Properties Length: 372aa    MW: 39048.9 Da    PI: 9.5078
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro06_G06136genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof64.22.4e-201101432962
       zf-Dof  29 PryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                   r+fCk+CrryWt+GGalrnvPvGgg+r+nk+ss
  Ro06_G06136 110 ARHFCKTCRRYWTRGGALRNVPVGGGCRRNKRSS 143
                  49*****************************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    
MVFSSIPAYL DPANWQQQPN HHHHHHLLSG SSSNNNNNNN ISNNNSQLQQ LPPPPPPLPS  60
NPGAGGGGPG GAGSIRPGSM ADRAPGTEMP ALRVHQHQVL LLQQLQPHPA RHFCKTCRRY  120
WTRGGALRNV PVGGGCRRNK RSSKGGSSRS KSPVSSSDRP TGSAGSSGQA IPSNSSSGTV  180
DMMAAGLSPQ IPPLRFVNPF TDHHFSANEN LGLNYGVNYG GGVGDLGFQI GSGLGGGISS  240
TATGSLFEQW RFQQQTPSFP FLSGGLDPSP AGLFDNSGVE LSGYNQVRPR LLSCGSSVGV  300
SSQMASVKTE DPHHPNHQQQ EMNLSRQLLG IQGGNDSQYW INGGGNGNGT STTAWTDLSG  360
FSSTSTATNH PL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37590.11e-08Dof family protein