PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro06_G06119

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

MYB

Protein Properties

Length: 667aa MW: 73226.8 Da PI: 8.2016

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro06_G06119	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	56.8	5.1e-18	74	120	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT++Ede l +av+++ g++Wk+Ia++++ R++ qc +rwqk+l Ro06_G06119 74 KGGWTPQEDETLRNAVAKFKGKNWKKIAQYFP-DRSEVQCLHRWQKVL 120 688***************************.**********986 PP
2	Myb_DNA-binding	61.7	1.5e-19	126	172	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd+++v++v+++G+ W++I++ ++ gR +kqc++rw+++l Ro06_G06119 126 KGPWTQEEDDKIVELVAKYGPTKWSLISKSLP-GRIGKQCRERWHNHL 172 79****************************.***********97 PP
3	Myb_DNA-binding	50.7	4e-16	178	221	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r++WT E++ l +a++++G++ W+ Ia+ ++ gRt++ +k++w++ Ro06_G06119 178 RDAWTLVEELALMHAHRMHGNK-WAEIAKALP-GRTDNAIKNHWNS 221 789*****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 667 aa Download sequence
MSSNSIPSTS SQAEKERSEV QIEECCLENK QSTAASSSES EGSESAILKS PGIGSPTEAS 60 PINKRITGPI RRAKGGWTPQ EDETLRNAVA KFKGKNWKKI AQYFPDRSEV QCLHRWQKVL 120 NPELVKGPWT QEEDDKIVEL VAKYGPTKWS LISKSLPGRI GKQCRERWHN HLNPDIKRDA 180 WTLVEELALM HAHRMHGNKW AEIAKALPGR TDNAIKNHWN SSLKKKLDFY LATGQLPPAP 240 KNSYPNVAKE TNRTTATKRL LVGSDKGSDS TAQILPDADK RRIDEDGKDQ LQSSEPLDMD 300 MCAFYLATGQ LPPVPKNSYP NGAKETNRST ATTRLLVGSD KGSDSTSQTL SGNADTRKID 360 EDGKDQLQSS GSQDMCGSSN ILPDEHADSE VVECRLRLSL MDPSCSNSES MPKFSNFGGN 420 SKPQIENSSI NSQLKNESSE FNNPKVEDKV NSTSVRVETP SYGSLYYEPP PLDSSIPLDS 480 GFSNLHCLQH DYKSSPNLSP ISFFTPPTVK SSGLCNRSPE SILKIAAKTF PNTPSILRKR 540 KSAQGHLPPN KVRTVDCASV RETLIVPEEQ ERNKNSVEMS GSQDVSLCES PTSHGVSTSG 600 PNGKAFNASP PYRLRSRRTA VFKSVEKQLQ FTCEEEYAGN SKPAELSANG GSAVTKDCLH 660 ATKMGVT

Sequence ? help Back to Top

Protein Sequence Length: 667 aa Download sequence

MSSNSIPSTS SQAEKERSEV QIEECCLENK QSTAASSSES EGSESAILKS PGIGSPTEAS  60
PINKRITGPI RRAKGGWTPQ EDETLRNAVA KFKGKNWKKI AQYFPDRSEV QCLHRWQKVL  120
NPELVKGPWT QEEDDKIVEL VAKYGPTKWS LISKSLPGRI GKQCRERWHN HLNPDIKRDA  180
WTLVEELALM HAHRMHGNKW AEIAKALPGR TDNAIKNHWN SSLKKKLDFY LATGQLPPAP  240
KNSYPNVAKE TNRTTATKRL LVGSDKGSDS TAQILPDADK RRIDEDGKDQ LQSSEPLDMD  300
MCAFYLATGQ LPPVPKNSYP NGAKETNRST ATTRLLVGSD KGSDSTSQTL SGNADTRKID  360
EDGKDQLQSS GSQDMCGSSN ILPDEHADSE VVECRLRLSL MDPSCSNSES MPKFSNFGGN  420
SKPQIENSSI NSQLKNESSE FNNPKVEDKV NSTSVRVETP SYGSLYYEPP PLDSSIPLDS  480
GFSNLHCLQH DYKSSPNLSP ISFFTPPTVK SSGLCNRSPE SILKIAAKTF PNTPSILRKR  540
KSAQGHLPPN KVRTVDCASV RETLIVPEEQ ERNKNSVEMS GSQDVSLCES PTSHGVSTSG  600
PNGKAFNASP PYRLRSRRTA VFKSVEKQLQ FTCEEEYAGN SKPAELSANG GSAVTKDCLH  660
ATKMGVT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G09370.1	1e-122	MYB family protein