PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ro06_G05519 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
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Family | MYB | ||||||||
Protein Properties | Length: 392aa MW: 43698.9 Da PI: 5.9103 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54 | 3.8e-17 | 34 | 81 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT eEd +lv++++++G+g+W+ ++ g+ R++k+c++rw +yl Ro06_G05519 34 KGPWTSEEDVILVNYIQEHGPGNWRNLPKNAGLQRCGKSCRLRWTNYL 81 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 54.3 | 3e-17 | 87 | 131 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rgr++ eE+e +++++ lG++ W++Ia++++ gRt++++k++w+++ Ro06_G05519 87 RGRFSFEEEETIIQLHSILGNK-WSAIAARLP-GRTDNEIKNYWNTH 131 89********************.*********.************97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 392 aa Download sequence |
KLAPSSSSST KFQVCTPFTS MGRAPCCDKN GLKKGPWTSE EDVILVNYIQ EHGPGNWRNL 60 PKNAGLQRCG KSCRLRWTNY LRPDIKRGRF SFEEEETIIQ LHSILGNKWS AIAARLPGRT 120 DNEIKNYWNT HIRKRLLRMG IDPVTHAPRL DLLDLSSILG SYVSHLNPAA ALLNLSNLLG 180 TQQALNVNPE LLRLVTTLSS LKQGNTQLFS QNNQNQLCNV SQDLQNQLVP SLQSNPQFQN 240 LFQDDFSPDM ANLKQLMQMI NTEGNLPNMS NFSSPVSYSQ ENMVPNSILG TETAVSNLPS 300 YEPSSTSNPT VPELPGNSFF QLPLNNSNVN HDFGFDSVLS TPHSSPTPLN SSGTYNNINS 360 SSTEDERDLE SYCSNLLKFE IPDSTLDIND YM |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G21440.1 | 1e-100 | MYB family protein |