PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro06_G04893

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

MIKC_MADS

Protein Properties

Length: 250aa MW: 28979 Da PI: 8.6851

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro06_G04893	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	98.8	2.2e-31	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtf+kRrng+lKKA+ELS+LCdaeva+iifs++gklye++s Ro06_G04893 9 KRIENKINRQVTFAKRRNGLLKKAYELSILCDAEVALIIFSNRGKLYEFCS 59 79***********************************************96 PP
2	K-box	99.1	6.5e-33	82	173	9	100
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 + +++ es+++e+ kLk + e+Lqr+qR+llGe+L++L+ keL+qLe+qLe+slk++Rs+K++++l+q+++lq ke++l+e+n++L++kl+e Ro06_G04893 82 NPAKELESSYREYLKLKTRCESLQRTQRNLLGEELDPLNTKELEQLERQLESSLKHVRSTKTQYMLDQLSDLQSKEHMLKETNRDLTMKLDE 173 4677899**********************************************************************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 250 aa Download sequence
MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSILCD AEVALIIFSN RGKLYEFCSS 60 SSMLKTLERY QKCSYGAVEI NNPAKELESS YREYLKLKTR CESLQRTQRN LLGEELDPLN 120 TKELEQLERQ LESSLKHVRS TKTQYMLDQL SDLQSKEHML KETNRDLTMK LDEINSGNQL 180 RQTWESGHDH QRMLYETQHA QTQLGLMFQP LDCNPTLQIG YNVVGSQQQM AAATTTHAQQ 240 VNGFIPGWML

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15800.1	1e-107	MIKC_MADS family protein