PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro06_G04881
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family bHLH
Protein Properties Length: 345aa    MW: 38207 Da    PI: 5.7005
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro06_G04881genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.91.7e-08751071154
                  HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH  11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                  r       +f++Lr+++P++    ++K +Ka+ L +++eYI+ L
  Ro06_G04881  75 R-------RFQKLRDIIPQN----DQKRDKASFLLEVIEYIQFL 107
                  4.......59*********9....9*****************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    
MRVGPNSGSD LPPHFSPPSP LSVTPPTSKY ISEMAKASKG NHDEFEDDDE ETHTGKVEGQ  60
GREKNRSKHS ETEQRRFQKL RDIIPQNDQK RDKASFLLEV IEYIQFLHEK INFYEASYQG  120
WGPEPTKLIP WKSHHRPGQE NFADHSQVMT NGSGQENNVV APAMLANAQN SVESDLDSAA  180
VYKALDHIRG LATPSVPNLH QQNIFDPIDS IGTHKQPLQE SNSDAENMAC QPQYQLWPGI  240
TSATVTDSKL NRQDESRSVS ISSAYSQGVL NNLTLSLRSS GVDLSQASIN VELDVGNRAD  300
GGLKSMASSS QAHLCLNNQM MTHSQVSSIN EDFEPAHKRF RTGES
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G38860.11e-46bHLH family protein