PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro06_G04814

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

TCP

Protein Properties

Length: 346aa MW: 38619.4 Da PI: 8.4824

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro06_G04814	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	136.8	1.9e-42	113	244	2	134
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssgkaaksaakskk 99 a kkdrhski T++g+RdRRvRls+++a++fFdLqd LGfdk+skt+eWLl+++ +aik+l +++ ++ ++ ++ss + + s + ++s+ ++k Ro06_G04814 113 AMKKDRHSKIFTAQGLRDRRVRLSINVAREFFDLQDLLGFDKASKTLEWLLTKSTKAIKDLEKSKCNNTNSL-SSSSTLECDVVSDMNTEESEDNRKM 209 689***********************************************************33333222.1122222221222233333334444 PP TCP 100 sqksaasalnlakesrakarararertrekmrikn 134 +++ a + a+esrakarararertrekm+ ++ Ro06_G04814 210 KEAAAIDHAVRARESRAKARARARERTREKMCSTS 244 4445544566677*****************885 PP

Sequence ? help Back to Top
Protein Sequence Length: 346 aa Download sequence
MFSSTTNTSS GTVYPFPYNF PLCSSPYNHH PPLPQENRTC GGILGLHHDQ SSILNNAFMV 60 PGPEGTIINL GGVPSNAVVS SSGDYHGQQQ HGYGNNVYHP HIVSKEVKVP VVAMKKDRHS 120 KIFTAQGLRD RRVRLSINVA REFFDLQDLL GFDKASKTLE WLLTKSTKAI KDLEKSKCNN 180 TNSLSSSSTL ECDVVSDMNT EESEDNRKMK EAAAIDHAVR ARESRAKARA RARERTREKM 240 CSTSRRSPQI FSQLSLFTEL EPADMNQEPG STLLSNYQAE HHESVTVKRK LKAHSDSNYH 300 DRILGLISKS TETGSNCCSH GFKSMAKLWE ACTIYDCNDL LQAKHM

Sequence ? help Back to Top

Protein Sequence Length: 346 aa Download sequence

MFSSTTNTSS GTVYPFPYNF PLCSSPYNHH PPLPQENRTC GGILGLHHDQ SSILNNAFMV  60
PGPEGTIINL GGVPSNAVVS SSGDYHGQQQ HGYGNNVYHP HIVSKEVKVP VVAMKKDRHS  120
KIFTAQGLRD RRVRLSINVA REFFDLQDLL GFDKASKTLE WLLTKSTKAI KDLEKSKCNN  180
TNSLSSSSTL ECDVVSDMNT EESEDNRKMK EAAAIDHAVR ARESRAKARA RARERTREKM  240
CSTSRRSPQI FSQLSLFTEL EPADMNQEPG STLLSNYQAE HHESVTVKRK LKAHSDSNYH  300
DRILGLISKS TETGSNCCSH GFKSMAKLWE ACTIYDCNDL LQAKHM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G67260.2	3e-29	TCP family protein