PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro06_G03748
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family B3
Protein Properties Length: 323aa    MW: 36600.8 Da    PI: 5.1865
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro06_G03748genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B362.75.7e-20112209195
                  EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS.-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE.. CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesg.rsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefel 92 
                  f+k+l++sdv++++r+vlpkk ae+h   ++++e++ +++ d +g  +W++k+++  +++s++yvl+ ++ eFv+ +gL+ gDf++ +  ++ +++++
  Ro06_G03748 112 FQKELKNSDVSTLRRVVLPKKAAETHlpVLESKEGISISMDDIDGlHVWSFKYRFwpNNNSRMYVLE-NTGEFVSTHGLQLGDFIMVY--QDsENQNY 206
                  99**************************555568899********9*******9989999999***9.*******************9..44367667 PP

                  EEE CS
           B3  93 vvk 95 
                  v++
  Ro06_G03748 207 VIQ 209
                  766 PP
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    
MMMDQTQAAL HSKTEAFALR AGVNQLGLLT HDHDQDQEVV NTFHGSDRTG SIRDLVRAVS  60
TFGVQRKKRM MRQRRASTIN FQLSFATPSS HVLPSTPPPA RVTDPTRLRF LFQKELKNSD  120
VSTLRRVVLP KKAAETHLPV LESKEGISIS MDDIDGLHVW SFKYRFWPNN NSRMYVLENT  180
GEFVSTHGLQ LGDFIMVYQD SENQNYVIQA KKANCDQDDD DTVYGVEETM NINAVNELMI  240
NDDSVVVPDH QANKSSSFYM PTMDHDHMQD VNAGMSFIYD TTAFSNDSLL DFLGGSMTNY  300
SRSNGRLQEN FGSVENLSLD DFY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26790.13e-84B3 family protein