PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro06_G02881

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

NAC

Protein Properties

Length: 376aa MW: 44000.1 Da PI: 6.381

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro06_G02881	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	68.7	1.6e-21	5	140	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikev.diy.kvePwdLpk.....kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 ++G+rFhP+d e+v +yL++k + k+ +++i+++ d y + ePw + k e + +yfF+kr k+++++kr +r++ sg+W+ + k+ Ro06_G02881 5 QVGVRFHPKDYEVVGHYLANKSHMGKNFNSKFIHDCdDFYgEKEPWVIWDmyggsK--FgEGEPLYFFIKRIKQNPNSKRFTRKVGSGTWSGEYS-KQ 99 58*****************98887656589666635699963233322..1245577***********************98776.55 PP NAM 92 vlsk.....kgelvglkktLvfykgrapkgektdWvmheyrl 128 vl+k k +++g+ + + + +gr ++ ++ W+m ey++ Ro06_G02881 100 VLAKdsatgKPHKIGTMRNFRYENGRYSD-QNGAWLMAEYEM 140 5555366656666******999988.89******86 PP

Sequence ? help Back to Top
Protein Sequence Length: 376 aa Download sequence
MQGYQVGVRF HPKDYEVVGH YLANKSHMGK NFNSKFIHDC DDFYGEKEPW VIWDMYGGSK 60 FGEGEPLYFF IKRIKQNPNS KRFTRKVGSG TWSGEYSKQV LAKDSATGKP HKIGTMRNFR 120 YENGRYSDQN GAWLMAEYEM AEEDALVLCA LRKNSRKAPQ PYPDQRDIES TETKSANDKK 180 RKRHQLGKPN KRKNEEETYE VAQDLQPKKL KKEETYEEQG SSSCTQGLPY HHDQNNNNNN 240 YYYYYYQEHN NDYQDHNSTN YYQGTYYLDS SSTYYQELVG NDDLDSMDDF LGPISNDPRY 300 LESTQLQETD QFSFPNNDFN WINHSAGGVS QQPNDQHTVD YLTKIEKCDS RKQFNQENKA 360 KSALNSMSRI CTDLAY

Sequence ? help Back to Top

Protein Sequence Length: 376 aa Download sequence

MQGYQVGVRF HPKDYEVVGH YLANKSHMGK NFNSKFIHDC DDFYGEKEPW VIWDMYGGSK  60
FGEGEPLYFF IKRIKQNPNS KRFTRKVGSG TWSGEYSKQV LAKDSATGKP HKIGTMRNFR  120
YENGRYSDQN GAWLMAEYEM AEEDALVLCA LRKNSRKAPQ PYPDQRDIES TETKSANDKK  180
RKRHQLGKPN KRKNEEETYE VAQDLQPKKL KKEETYEEQG SSSCTQGLPY HHDQNNNNNN  240
YYYYYYQEHN NDYQDHNSTN YYQGTYYLDS SSTYYQELVG NDDLDSMDDF LGPISNDPRY  300
LESTQLQETD QFSFPNNDFN WINHSAGGVS QQPNDQHTVD YLTKIEKCDS RKQFNQENKA  360
KSALNSMSRI CTDLAY

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	179	212	KKRKRHQLGKPNKRKNEEETYEVAQDLQPKKLKK
2	180	211	KRKRHQLGKPNKRKNEEETYEVAQDLQPKKLK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04070.2	5e-13	NAC family protein