PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ro06_G02860 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
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Family | NF-YC | ||||||||
Protein Properties | Length: 216aa MW: 24592.9 Da PI: 6.301 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 179 | 4.4e-56 | 33 | 136 | 1 | 101 |
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdi 95 ql+sfw++q iek+tdfknh+lPlarikki+kadedv+misaeaPv++++ace+fileltlrsw+h+eenkrrtl+k+diaaa+trtdifdflvdi Ro06_G02860 33 QLQSFWTNQfqeIEKVTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDI 130 89******99999************************************************************************************* PP NF-YC 96 vprdel 101 vpr++l Ro06_G02860 131 VPREDL 136 ***987 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 216 aa Download sequence |
MQSNSQSAGA QLAQHQLAYQ HIHQQQQQQL QQQLQSFWTN QFQEIEKVTD FKNHSLPLAR 60 IKKIMKADED VRMISAEAPV IFARACEMFI LELTLRSWNH TEENKRRTLQ KNDIAAAITR 120 TDIFDFLVDI VPREDLKDEV LASIPRGTVS VGAADALPPY CYMPPQHGTQ VGAPGMIMGK 180 PMLDPSMYGQ QSHPYMAPQM WPQAPEQQQQ QSPSDH |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 106 | 112 | RRTLQKN |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08970.3 | 2e-83 | NF-YC family protein |