PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro05_G31457

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

Protein Properties

Length: 437aa MW: 50434.9 Da PI: 10.0739

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro05_G31457	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	39.4	1.1e-12	25	102	17	100
E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-SS CS B3 17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrks 100 +p +f+ ++g++ s + ++ + g +Wev l +++ g+++++kGW +F k L +D++vF ++g+s+f v++f++s Ro05_G31457 25 GIPEDFVCKYGKD--LSNPVCFKLPCGSEWEVGL--TRYNGEVWFKKGWPDFSKFYSLGYNDMLVFGYEGNSRF--QVSIFDRS 102 59**9999977..7778***********..******************************9999..**9985 PP
2	B3	43.7	4.8e-14	230	310	6	87
..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 +++++ ++++l+lp f ++h k+++s l+ g ++W+v l+y+ + +r + +GW +F k+n++k++D++vF l+++ Ro05_G31457 230 IRHSYINQNLLWLPFMFGRTHLTKQPSS--ALLRVAGGrKTWSVALKYEPTTKRASFHAGWVKFLKENDVKVNDVCVFVLMDD 310 5678889999*********6565565..5555655559************************************98864 PP
3	B3	44.1	3.7e-14	347	432	6	95
..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 +++++ + + ++lp f++ h +k ++++ +l+ + g+ W v++ +++r++l+ G +Fv+ n+Lk+gD +vF ++++ +f + v Ro05_G31457 347 LRPSYIRGNYMWLPAVFVRGHLIK--RPVDAILQVSGGKIWPVRF--HYNKERTTLQVGFADFVRGNNLKAGDACVFVMTNNIKFLFDVF 432 4566777788*********766..899************..77777899********************9877666644454 PP

Sequence ? help Back to Top
Protein Sequence Length: 437 aa Download sequence
MTSHLRRKFD QRPTFCSTTP HFFKGIPEDF VCKYGKDLSN PVCFKLPCGS EWEVGLTRYN 60 GEVWFKKGWP DFSKFYSLGY NDMLVFGYEG NSRFQVSIFD RSAIEIEYPI EHSKIEESEE 120 SDDSSVEILE EVPPCPRKTR EKYQLPSHLP HKKNRISSSD TAKINLSFEK SMKNKEAHNS 180 KSEMKSKDDF PVKKEWGGTS STQRFQKRTP EVHQKANAFK SHKPSFTMSI RHSYINQNLL 240 WLPFMFGRTH LTKQPSSALL RVAGGRKTWS VALKYEPTTK RASFHAGWVK FLKENDVKVN 300 DVCVFVLMDD IRLLFEVIVE AANCTMSSAL KRANAFKSVH PHFAVSLRPS YIRGNYMWLP 360 AVFVRGHLIK RPVDAILQVS GGKIWPVRFH YNKERTTLQV GFADFVRGNN LKAGDACVFV 420 MTNNIKFLFD VFIFRAT

Sequence ? help Back to Top

Protein Sequence Length: 437 aa Download sequence

MTSHLRRKFD QRPTFCSTTP HFFKGIPEDF VCKYGKDLSN PVCFKLPCGS EWEVGLTRYN  60
GEVWFKKGWP DFSKFYSLGY NDMLVFGYEG NSRFQVSIFD RSAIEIEYPI EHSKIEESEE  120
SDDSSVEILE EVPPCPRKTR EKYQLPSHLP HKKNRISSSD TAKINLSFEK SMKNKEAHNS  180
KSEMKSKDDF PVKKEWGGTS STQRFQKRTP EVHQKANAFK SHKPSFTMSI RHSYINQNLL  240
WLPFMFGRTH LTKQPSSALL RVAGGRKTWS VALKYEPTTK RASFHAGWVK FLKENDVKVN  300
DVCVFVLMDD IRLLFEVIVE AANCTMSSAL KRANAFKSVH PHFAVSLRPS YIRGNYMWLP  360
AVFVRGHLIK RPVDAILQVS GGKIWPVRFH YNKERTTLQV GFADFVRGNN LKAGDACVFV  420
MTNNIKFLFD VFIFRAT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	136	142	PRKTREK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18990.1	2e-26	B3 family protein