PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro05_G31170

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

FAR1

Protein Properties

Length: 652aa MW: 74830.4 Da PI: 7.8263

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro05_G31170	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	67.1	4.5e-21	63	156	1	90
FAR1 1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHela 90 ++Y+e+Ak++GFs+r+++++ + + t+r fvC + g++ +++++++k +r+r+++r+gC+a ++++k++ +w+vt + ++HnHel Ro05_G31170 63 EYYSEFAKQCGFSIRRHRTEGKdGVGKGLTRRYFVCHRAGNTPNKTSNESKPQRNRKSSRCGCQAYMRISKTTelgAPEWRVTGFANHHNHELL 156 69***********9998877356667999*************999****************99888889***********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 652 aa Download sequence
MMSEEAGVML VVCDDPSDQR SFSLDDTSSS EESLDETRLS LETTNDVIPY IGKRFATHDA 60 AYEYYSEFAK QCGFSIRRHR TEGKDGVGKG LTRRYFVCHR AGNTPNKTSN ESKPQRNRKS 120 SRCGCQAYMR ISKTTELGAP EWRVTGFANH HNHELLEPNQ VRFLPAYRTI SESDKSRILM 180 FAKTGISVQQ MMRLMELEKC VEPGYLPFTE KDVRNLLQSF RKLDPEEESI DLLRMCRNIK 240 EKDLNFKFEY TIDSKNRLEN IAWSYASSVQ SYEIFGDAVV FDTTHRLTAF DMPLGIWVGI 300 NNYGMPCFFG CVLLREESVR SFSWALKAFL GFMYGKAPQT ILTDQNLFLK EAISVEMPTT 360 KHALCVWMIV AKFPSWFNAV LGERYNEWKS EFYRIYNLES IEDFELGWRD LVNSFGLQSN 420 RHIVNLYGLR SLWALPFLRS HFFAGMATIG QSKSINAFIQ RFLSAQTRLA HFVEQVAVAV 480 DFKDQAGEQQ TMQQNIQNIC LKTGAPMESH AASILTPYAF SKLQEQLVLA AHYASFQMED 540 GFLVRHHTKA DGGRKVYWVP REGIISCSCH HFEFSGILCR HALRVLSTGN CFQIPDRYLP 600 VRWRRISMPS AKLLHSAPSD HAERIQMLQS IVSTLVTESA KSRERLDIAT EQ

Sequence ? help Back to Top

Protein Sequence Length: 652 aa Download sequence

MMSEEAGVML VVCDDPSDQR SFSLDDTSSS EESLDETRLS LETTNDVIPY IGKRFATHDA  60
AYEYYSEFAK QCGFSIRRHR TEGKDGVGKG LTRRYFVCHR AGNTPNKTSN ESKPQRNRKS  120
SRCGCQAYMR ISKTTELGAP EWRVTGFANH HNHELLEPNQ VRFLPAYRTI SESDKSRILM  180
FAKTGISVQQ MMRLMELEKC VEPGYLPFTE KDVRNLLQSF RKLDPEEESI DLLRMCRNIK  240
EKDLNFKFEY TIDSKNRLEN IAWSYASSVQ SYEIFGDAVV FDTTHRLTAF DMPLGIWVGI  300
NNYGMPCFFG CVLLREESVR SFSWALKAFL GFMYGKAPQT ILTDQNLFLK EAISVEMPTT  360
KHALCVWMIV AKFPSWFNAV LGERYNEWKS EFYRIYNLES IEDFELGWRD LVNSFGLQSN  420
RHIVNLYGLR SLWALPFLRS HFFAGMATIG QSKSINAFIQ RFLSAQTRLA HFVEQVAVAV  480
DFKDQAGEQQ TMQQNIQNIC LKTGAPMESH AASILTPYAF SKLQEQLVLA AHYASFQMED  540
GFLVRHHTKA DGGRKVYWVP REGIISCSCH HFEFSGILCR HALRVLSTGN CFQIPDRYLP  600
VRWRRISMPS AKLLHSAPSD HAERIQMLQS IVSTLVTESA KSRERLDIAT EQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10240.1	0.0	FAR1 family protein