PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro05_G31136

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

MYB_related

Protein Properties

Length: 809aa MW: 88586.2 Da PI: 5.0062

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro05_G31136	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	22.3	3e-07	612	640	2	30
SSS-HHHHHHHHHHHHHTTTT-HHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIart 30 +rW+ E++ l +v+++G+g+Wk I Ro05_G31136 612 KRWSSHEEDTLRTGVQKYGKGNWKFILDA 640 69**********************99875 PP

Sequence ? help Back to Top
Protein Sequence Length: 809 aa Download sequence
MDSDVDVSRW VLELLLRDRD KETIAKRVLA VAPLPNHDCR LKKTVLLRTI ESAIYDDILV 60 TETILETLES IEALDRAQGF PTTEAMRAAY CAVATECTVK FLVCFGGKPK GKYMEAVDRI 120 WRGRVRVLEE SGRSELVSAE LKERRDEVEA GIWDRNVSKK LASMDTRNDA LRLVAAYVTE 180 AWAMICPPFI TWAVRFNTAK ESLGEDDGNV GDGCEKEVRM ANGDELEVQI TIGTDLGDGP 240 KLEAKGANVG DGSKLEAQME SDTKVGDGSE LDAQIGSGIN VSSGTALEVP LANGADLGDG 300 QRTIGANVCD GANGANVGGA KWEARKVEND TNVGDVYDSQ IVTVAYFNSG SALGYHSLNG 360 VRVKVVKAGR SPPNANHGDI SFEPATKERE TPRNTELRRK HGPVKIRDAE DVGTDASDGI 420 HNYMPSAEVR KVQEELKSSV MALQTVVTDP LPYALHVSEI VRSELETVNH VSGEDGAANP 480 SVQKNTEPDH SNSDTHEDLT SSRQNDVPLP TGKENDAPNL SIDKGKGTEY FLSGDLNPGD 540 LCCSNQNSVP RPGLMERNST AHTYEWDDSL GMSPEGTTNG EGSLHLPSPK RNAVSPLKKY 600 EDKRFAKRRK QKRWSSHEED TLRTGVQKYG KGNWKFILDA YQDVFAERTE LNNHDAQFGA 660 APNNPYSLNG EDAHLICVEH NTIGLQMVSE DRLSLYLSKD NSTSRPSWAT APNDPPDSAE 720 KIRVQASPGD IIILDTNGLL NNLFPSKIEQ VLDETPMGLL VRPKVLVLKI AHLALEKFRD 780 KLGITHFSRV VQKAGPIVWE AKLKTSLLL

Sequence ? help Back to Top

Protein Sequence Length: 809 aa Download sequence

MDSDVDVSRW VLELLLRDRD KETIAKRVLA VAPLPNHDCR LKKTVLLRTI ESAIYDDILV  60
TETILETLES IEALDRAQGF PTTEAMRAAY CAVATECTVK FLVCFGGKPK GKYMEAVDRI  120
WRGRVRVLEE SGRSELVSAE LKERRDEVEA GIWDRNVSKK LASMDTRNDA LRLVAAYVTE  180
AWAMICPPFI TWAVRFNTAK ESLGEDDGNV GDGCEKEVRM ANGDELEVQI TIGTDLGDGP  240
KLEAKGANVG DGSKLEAQME SDTKVGDGSE LDAQIGSGIN VSSGTALEVP LANGADLGDG  300
QRTIGANVCD GANGANVGGA KWEARKVEND TNVGDVYDSQ IVTVAYFNSG SALGYHSLNG  360
VRVKVVKAGR SPPNANHGDI SFEPATKERE TPRNTELRRK HGPVKIRDAE DVGTDASDGI  420
HNYMPSAEVR KVQEELKSSV MALQTVVTDP LPYALHVSEI VRSELETVNH VSGEDGAANP  480
SVQKNTEPDH SNSDTHEDLT SSRQNDVPLP TGKENDAPNL SIDKGKGTEY FLSGDLNPGD  540
LCCSNQNSVP RPGLMERNST AHTYEWDDSL GMSPEGTTNG EGSLHLPSPK RNAVSPLKKY  600
EDKRFAKRRK QKRWSSHEED TLRTGVQKYG KGNWKFILDA YQDVFAERTE LNNHDAQFGA  660
APNNPYSLNG EDAHLICVEH NTIGLQMVSE DRLSLYLSKD NSTSRPSWAT APNDPPDSAE  720
KIRVQASPGD IIILDTNGLL NNLFPSKIEQ VLDETPMGLL VRPKVLVLKI AHLALEKFRD  780
KLGITHFSRV VQKAGPIVWE AKLKTSLLL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G06910.1	6e-12	MYB_related family protein