PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro05_G30826

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

YABBY

Protein Properties

Length: 181aa MW: 20088.7 Da PI: 7.538

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro05_G30826	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	72.6	1.3e-22	14	59	2	47
YABBY 2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtslls 47 d+ seq+Cyv+Cn C+t+lavsvP tslfk+vtvrCGhCt+ll Ro05_G30826 14 DHLPPSEQLCYVHCNICDTVLAVSVPCTSLFKTVTVRCGHCTNLLP 59 577899**************************************96 PP
2	YABBY	71.6	2.8e-22	106	141	135	170
YABBY 135 eeiqrikasnPdishreafsaaaknWahfPkihfgl 170 +eiqrik+ nPdishreafsaaaknWahfP+ihfgl Ro05_G30826 106 DEIQRIKSVNPDISHREAFSAAAKNWAHFPHIHFGL 141 79********************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 181 aa Download sequence
MSSSNSAAST LSLDHLPPSE QLCYVHCNIC DTVLAVSVPC TSLFKTVTVR CGHCTNLLPD 60 QEIPMNPSPN FLMNNQTSNL NDFAVRPRGG IADELPRPPV INRRTDEIQR IKSVNPDISH 120 REAFSAAAKN WAHFPHIHFG LMPDQTTAKK TNVRQQEAGE DVLMKDHNGF FAAANNNVRR 180 Q

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45190.1	3e-50	YABBY family protein