PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro05_G30534
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family bHLH
Protein Properties Length: 333aa    MW: 37130.1 Da    PI: 8.2822
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro05_G30534genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH171e-05117166154
                  CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                  +r  +  rE++ R+++N+ f eL + l  +    ++   Ka+iL +A++ +k+L
  Ro05_G30534 117 KRIHKAVREKQKREHLNDLFLELSDALELN----QQNTGKASILCEATRLLKDL 166
                  6888899********************998....68899*********999987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    
MLTCPCSLYQ NGERTPHALP LRPHSVSSSS VARHLQFRHA PPTSLISYHF YVYTQTLFYF  60
ASKFPNFFAL AFSSLRRVLE IMGSKDPAPV VDKVNGATQA SGDRACPGRK IQGKIPKRIH  120
KAVREKQKRE HLNDLFLELS DALELNQQNT GKASILCEAT RLLKDLLGQI KSLRNENVSL  180
LSESNYMTIE KNELREDTSA LETQIEKLQS ELEERVLQSN PDLNAPPAEF RPEVASHFTG  240
NCLGLPAQEP ALQPAPTVFV MPLHPDLQTY PPADAAYLTS NTSSNVSKPH ARYPTSVDSW  300
PFQLLGEQPA ACKESRRSGN TSALRLIEYR GCS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47640.23e-69bHLH family protein