PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ro05_G24068 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
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Family | MYB | ||||||||
Protein Properties | Length: 717aa MW: 82408 Da PI: 5.6488 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 24.7 | 5.3e-08 | 385 | 433 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT....TTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmg....kgRtlkqcksrwqk 46 +WT +Ed+ +++ v++ G ++W Ia+ + ++Rt+ qc r+q Ro05_G24068 385 EPWTVDEDKNILEIVQEKGVNDWIDIAASLLvrkgTNRTPFQCLARYQR 433 58*********************************************96 PP | |||||||
2 | Myb_DNA-binding | 37.5 | 5.5e-12 | 443 | 485 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 WT+++d +l av+ +G g+W ++a+ + gRt+ qc +rw k Ro05_G24068 443 EWTKDDDAKLGSAVEAFGEGDWQSVASSLE-GRTGTQCSNRWKK 485 7*****************************.***********98 PP | |||||||
3 | Myb_DNA-binding | 40.2 | 8.1e-13 | 494 | 539 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqk 46 +g+WT eEd +l a +Gg +W++I++ ++ gRt qc++r+ + Ro05_G24068 494 KGKWTLEEDTRLTVAQMFFGGSkNWNKISQFVP-GRTQAQCRDRFVN 539 79******************99***********.**********976 PP | |||||||
4 | Myb_DNA-binding | 43.1 | 1e-13 | 548 | 591 | 2 | 47 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 g WT+eEd l a++++G W++++++++ Rt+++c rw + Ro05_G24068 548 GEWTEEEDSMLRAAIAEHGHC-WSKVSSCVP-QRTDNMCWRRWKVL 591 68*****************99.*********.***********865 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 717 aa Download sequence |
MYPLTENEKE EVSCGEEEED DKGFNEDMEA LRHACMLTGR DPDDIDKEEE DDDEGFNEDL 60 EALRRACMLP GGDPSDIDKD DDIDEDLELL NKIKSQFSDS LTCKPLSLST LPPATVYDDY 120 QTLLAIQKRF AAYDKDTQDN SPEQIDPSCF NEEISTTDTE QGQPSTSENS GLFPKSALAF 180 LDAINKNRAC QKLLQSKLIH IQAKIEENQK LKQRVKILRD FQLHCKRRTG EALSQKKDPR 240 VQLILTKRPR GDSIKPPHDD EDGAMSYGQE QNSHVANYRM MALKKFPDRK NWSEVEKKDL 300 QKGIRQQFQK MVLQSSYSEI QNSYNDDIDN ILSSIKDVEI TPYSIREFLP KVNWRQLAAM 360 YVPGRSGEEC RARWLNSEDP LINHEPWTVD EDKNILEIVQ EKGVNDWIDI AASLLVRKGT 420 NRTPFQCLAR YQRSLNASIL KHEWTKDDDA KLGSAVEAFG EGDWQSVASS LEGRTGTQCS 480 NRWKKALHPS RTRKGKWTLE EDTRLTVAQM FFGGSKNWNK ISQFVPGRTQ AQCRDRFVNS 540 LEPSLKFGEW TEEEDSMLRA AIAEHGHCWS KVSSCVPQRT DNMCWRRWKV LFPQQVLFLR 600 QEKRIRNSAL IRNFVDREEE RPALGPNDFL LPDNTSTHPR KTGRGSQSGN KKNVSSNCQV 660 PWSDHEQVHN SNEVEMCDGD DASKKKKKVL KQRRRRHNCT EPTRVSQNGM DGSRGEY |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18100.1 | 1e-169 | MYB family protein |