PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro05_G19175

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

ARF

Protein Properties

Length: 667aa MW: 74332.2 Da PI: 6.6742

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro05_G19175	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	79.2	4.4e-25	139	241	1	99
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 f k+ltpsd+++ g +++p+ +a+++ +++ + tl+++d++g +W++++iyr++++r++lt+GW++Fv+ + L +gD+vvF++++ +++e Ro05_G19175 139 FAKILTPSDANNGGGFSVPRFCADSIfpplnyqAEPPVQ--TLSVTDLHGVVWDFRHIYRGTPRRHLLTTGWSKFVNHKMLVAGDSVVFMRSS-RGGE 233 89*******************999985444444..9********************************************765.8999 PP .EEEEE-S CS B3 92 lvvkvfrk 99 ++v+v+r+ Ro05_G19175 234 MYVGVRRT 241 ***996 PP
2	Auxin_resp	94.1	2.2e-31	284	366	2	83
Auxin_resp 2 ahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 + a++ ++FevvY+P+a++s+Fvvk+e vekalk +++GmR+kma+et+dss+ ++ +Gt ++vs d+ W++S+Wr+L+ Ro05_G19175 284 TEMAAQDMPFEVVYYPKAGWSDFVVKAEVVEKALKLFWTAGMRVKMAMETDDSSRMTWfQGTLSSVSVPDNGPWQGSPWRMLQ 366 678999***************************************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 667 aa Download sequence
MPPNPQRHSR SRSHSHSQSH HHPSPPQLLS IDPKIWRACA GNSVTIPTLH SRVYYFPQGH 60 LEHSTSSSVP FLLSPLVLSK PLILCRIAAV QFLADPTTDE VFAKLLLHPV HSGLSPTHRQ 120 LSEAVEEEEE DDGDRVVSFA KILTPSDANN GGGFSVPRFC ADSIFPPLNY QAEPPVQTLS 180 VTDLHGVVWD FRHIYRGTPR RHLLTTGWSK FVNHKMLVAG DSVVFMRSSR GGEMYVGVRR 240 TVRASPGGDC GRWSSHIALK SEEEGSGRDG FKTRLSAEVV AEATEMAAQD MPFEVVYYPK 300 AGWSDFVVKA EVVEKALKLF WTAGMRVKMA METDDSSRMT WFQGTLSSVS VPDNGPWQGS 360 PWRMLQVTWD EPEVLHNAKR VSPWQVDFVA STPSLHTSPS LHTVFPPTKR FRAPLNPGLL 420 RNGEEEFMIP MTGATNSTMG QFNASLLNYN IFPAGMQGAR HDLFCVSNVS HLLNENTPQM 480 CTYNSYGNNN MVPRLKRVST ELNIGSPQSD QLTPDSQSSP HSFGVELDGN QYCNSTKVGR 540 SSFQLFGKTI HMKEPIQGID AVGCTGEGGN IGYNESELLN NQLDLSYTKL LERIDIRVSA 600 VEACTFRIIL GLSSYEEDII LINFIKPVHS ENYLLSQVWQ KLIRILTVAV VFCVYYEEDL 660 DPKDGRC

Sequence ? help Back to Top

Protein Sequence Length: 667 aa Download sequence

MPPNPQRHSR SRSHSHSQSH HHPSPPQLLS IDPKIWRACA GNSVTIPTLH SRVYYFPQGH  60
LEHSTSSSVP FLLSPLVLSK PLILCRIAAV QFLADPTTDE VFAKLLLHPV HSGLSPTHRQ  120
LSEAVEEEEE DDGDRVVSFA KILTPSDANN GGGFSVPRFC ADSIFPPLNY QAEPPVQTLS  180
VTDLHGVVWD FRHIYRGTPR RHLLTTGWSK FVNHKMLVAG DSVVFMRSSR GGEMYVGVRR  240
TVRASPGGDC GRWSSHIALK SEEEGSGRDG FKTRLSAEVV AEATEMAAQD MPFEVVYYPK  300
AGWSDFVVKA EVVEKALKLF WTAGMRVKMA METDDSSRMT WFQGTLSSVS VPDNGPWQGS  360
PWRMLQVTWD EPEVLHNAKR VSPWQVDFVA STPSLHTSPS LHTVFPPTKR FRAPLNPGLL  420
RNGEEEFMIP MTGATNSTMG QFNASLLNYN IFPAGMQGAR HDLFCVSNVS HLLNENTPQM  480
CTYNSYGNNN MVPRLKRVST ELNIGSPQSD QLTPDSQSSP HSFGVELDGN QYCNSTKVGR  540
SSFQLFGKTI HMKEPIQGID AVGCTGEGGN IGYNESELLN NQLDLSYTKL LERIDIRVSA  600
VEACTFRIIL GLSSYEEDII LINFIKPVHS ENYLLSQVWQ KLIRILTVAV VFCVYYEEDL  660
DPKDGRC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G77850.1	1e-160	ARF family protein