PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro05_G16799
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family WRKY
Protein Properties Length: 305aa    MW: 34814.2 Da    PI: 4.895
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro05_G16799genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.34.1e-30133190258
                  --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnh 58 
                  +D ++WrKYGqK++kgs++prsYYrC+s+ gC+++k+vers ++p++++itY+ eHnh
  Ro05_G16799 133 SDVWAWRKYGQKPIKGSPYPRSYYRCSSSkGCSARKQVERSCSNPELFIITYTAEHNH 190
                  79*************************998**************************** PP
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    
MENWDLQAVV RGCNNNFEAL TNTMEYSQPC NFGFAPLTIE DDDIFHAFPL LFEATTAFDE  60
LEELYKPFYP LLQPISPPTI PTPSVSVPQE VAEKEEEPKK LKSMKESSPM CKRSRKNQSK  120
RVVKEVKEED LFSDVWAWRK YGQKPIKGSP YPRSYYRCSS SKGCSARKQV ERSCSNPELF  180
IITYTAEHNH VHPTRRNSLA GSTRTKFPKS QKKEKRTKEV VPVKEEAQRL QEEDEVSQES  240
VMDMMLGDEV VPGLEDLDQK LEELGEFMAS EPVLADGFFS DPFSDSYFPS SWFTVHSSST  300
VTGAC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23550.17e-42WRKY family protein