PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro05_G16459

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

LBD

Protein Properties

Length: 320aa MW: 36109.1 Da PI: 4.6912

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro05_G16459	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	119.7	1.7e-37	10	110	1	101
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 aCaaCk++rrkC+++C+lap fp +qpk f+n+hklFG+ n+lk+l+++++ + ++m+s++y+A++r + PvyG+ +vi++lq q++ +++el+ ++ Ro05_G16459 10 ACAACKYQRRKCTPECPLAPFFPPDQPKMFQNAHKLFGVCNILKILNSVDPCLKFETMKSIIYQANIRDKFPVYGCWEVIWQLQYQIMVAEQELQNVH 107 7***********************************************************************************************99 PP DUF260 99 eel 101 ++l Ro05_G16459 108 KQL 110 985 PP

Sequence ? help Back to Top
Protein Sequence Length: 320 aa Download sequence
MTLKGAASQA CAACKYQRRK CTPECPLAPF FPPDQPKMFQ NAHKLFGVCN ILKILNSVDP 60 CLKFETMKSI IYQANIRDKF PVYGCWEVIW QLQYQIMVAE QELQNVHKQL ALYRQHHYHQ 120 QQQQISAMPD YVTSQLELGM APPNNNNTIS LLNHSTPQPY NDNNAIPVTQ QQQQPYSNRS 180 VDDAYTPAYD IDSKENITAA NALWAQNPFA NNNSSINDNN NNAETVQSEL GVSQPLAIEP 240 EDVQDYDELH PFFDTIDDRQ SYIDSKEAYD SSSSDESFKD TTQSSMEHAA ENALKSAAAC 300 FSLTGVKLSC LTRVSQGYQI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47870.1	6e-59	LBD family protein