PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro05_G16431

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

WRKY

Protein Properties

Length: 436aa MW: 47881.1 Da PI: 8.3474

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro05_G16431	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	96.9	1.4e-30	187	246	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dg++WrKYGqK kg+++pr+YYrCt a +Cpv+k+v+r+a+d +++++tYeg+Hnh+ Ro05_G16431 187 MNDGCQWRKYGQKIAKGNPCPRAYYRCTIApSCPVRKQVQRCADDMSILITTYEGTHNHP 246 58*************************99**************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 436 aa Download sequence
MTLINVQDYQ LESARAEMGE VKQENQRLKK YLDRMMEDYQ TLQMQYHDIQ QKATNTQQDE 60 DESEQLVSLS LGSFASKPKK AEEKNKSPST QVGKENETDD EKSLSLGLDC KYEAPKSSST 120 TTDQLPLSKT SPASSVEEVR KEEAGETWPP KKVLKTMRSI VEDEVSQQNP AKKARVSVRA 180 RCDTPTMNDG CQWRKYGQKI AKGNPCPRAY YRCTIAPSCP VRKQVQRCAD DMSILITTYE 240 GTHNHPLPMS ATAMASTTSA AASMLLSGSS SSSSRPGLNP SVGATTTAAD LHGYNYYVLY 300 PQTSLNFGSS DQSNNTMSWS NNGFLSYGNG TQLPYNNKNP ILGRQQQPMQ NSIYQNYMQK 360 NNPTPQHGGT TASSYLQTAI KGNNINGCAT SYLNKPTSSS ANVSQSGSLM FLQPPSSLPF 420 ATHKGASTSP SEDHKS

Sequence ? help Back to Top

Protein Sequence Length: 436 aa Download sequence

MTLINVQDYQ LESARAEMGE VKQENQRLKK YLDRMMEDYQ TLQMQYHDIQ QKATNTQQDE  60
DESEQLVSLS LGSFASKPKK AEEKNKSPST QVGKENETDD EKSLSLGLDC KYEAPKSSST  120
TTDQLPLSKT SPASSVEEVR KEEAGETWPP KKVLKTMRSI VEDEVSQQNP AKKARVSVRA  180
RCDTPTMNDG CQWRKYGQKI AKGNPCPRAY YRCTIAPSCP VRKQVQRCAD DMSILITTYE  240
GTHNHPLPMS ATAMASTTSA AASMLLSGSS SSSSRPGLNP SVGATTTAAD LHGYNYYVLY  300
PQTSLNFGSS DQSNNTMSWS NNGFLSYGNG TQLPYNNKNP ILGRQQQPMQ NSIYQNYMQK  360
NNPTPQHGGT TASSYLQTAI KGNNINGCAT SYLNKPTSSS ANVSQSGSLM FLQPPSSLPF  420
ATHKGASTSP SEDHKS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15130.1	2e-67	WRKY family protein