PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro05_G15980

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

RAV

Protein Properties

Length: 344aa MW: 39658.8 Da PI: 9.5471

Description

RAV family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro05_G15980	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	33	1.5e-10	60	108	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +++kGV +g W A+I+ + r++lg+f ++ eAa a++ a+ kl++ Ro05_G15980 60 TKFKGVVLQQ-NGHWGAQIYA------NhNRVWLGTFNSEVEAAMAYDSAAIKLRN 108 699*9877.8**999......44******99***********97 PP
2	B3	79.2	4.1e-25	183	275	1	83
EEEE-..-HHHHTT-EE--HHH.HTT..........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 f+k+ltpsdv+k++rlv+pk++a+++ g ++ +++l+++d++ r W+++++y+k+s+++v+t+GW++Fvk+ Lk++D++ F+ Ro05_G15980 183 FQKELTPSDVGKLNRLVIPKNYATKYfprideevqgGPAPAPDVQLSFYDQNMRPWKFRYCYWKSSQSFVFTRGWNRFVKERLLKANDTIRFY 275 99************************99999987555667899*********************************************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 344 aa Download sequence
MAMEMEENLS STVSNSGTTT RRKRTYQLAE ASAVSSFTDF LVQESKRLSH HGSSNLSSNT 60 KFKGVVLQQN GHWGAQIYAN HNRVWLGTFN SEVEAAMAYD SAAIKLRNGE CQRNFAWTKF 120 TDQEPYFQNL YSQEAVLNMI KDGSYQATFI EFLMARQAAQ KVAGLATESN SANKRDLFHK 180 QLFQKELTPS DVGKLNRLVI PKNYATKYFP RIDEEVQGGP APAPDVQLSF YDQNMRPWKF 240 RYCYWKSSQS FVFTRGWNRF VKERLLKAND TIRFYECHII REGDKEAKSF YMIKIDRAET 300 LTPLHDKKFE LNSQVIDEIP QVNGDSKRIR LFANIVYVAN SIHP

Sequence ? help Back to Top

Protein Sequence Length: 344 aa Download sequence

MAMEMEENLS STVSNSGTTT RRKRTYQLAE ASAVSSFTDF LVQESKRLSH HGSSNLSSNT  60
KFKGVVLQQN GHWGAQIYAN HNRVWLGTFN SEVEAAMAYD SAAIKLRNGE CQRNFAWTKF  120
TDQEPYFQNL YSQEAVLNMI KDGSYQATFI EFLMARQAAQ KVAGLATESN SANKRDLFHK  180
QLFQKELTPS DVGKLNRLVI PKNYATKYFP RIDEEVQGGP APAPDVQLSF YDQNMRPWKF  240
RYCYWKSSQS FVFTRGWNRF VKERLLKAND TIRFYECHII REGDKEAKSF YMIKIDRAET  300
LTPLHDKKFE LNSQVIDEIP QVNGDSKRIR LFANIVYVAN SIHP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51120.1	4e-91	RAV family protein