PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro05_G14134
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family bHLH
Protein Properties Length: 219aa    MW: 23869.3 Da    PI: 9.9927
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro05_G14134genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH45.31.6e-144086354
                 HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH  3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                 ++h+e+ErrRR+riNs +++Lr+llP+       + +Ka+ L ++v+++k+L
  Ro05_G14134 40 KSHKEAERRRRQRINSHLSTLRTLLPST-----ARTDKASLLAEVVQHVKEL 86
                 79*************************6.....59***************99 PP
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    
MLSFNELLER QYQNSPPSMV SLMDGADSIM NSAAASEASK SHKEAERRRR QRINSHLSTL  60
RTLLPSTART DKASLLAEVV QHVKELKTRV DELARQDGGS SALPGELDEA SLSFCEGGEA  120
KLLKVTLCCE DRPGLNRDLI QAIRSVRVRV VKAEMVTVGG RTKSVVVMKW TGGGGGEEDV  180
KVLKGALLAV VENRASGSRV GRLLGKRARF YGSVYDHHP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56770.17e-30bHLH family protein