PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro05_G13903

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

Nin-like

Protein Properties

Length: 970aa MW: 109031 Da PI: 6.1452

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro05_G13903	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	92.8	2.5e-29	661	712	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek i+le+l+kyFs+++kdAAk+Lgvc T+LKriCRq+GIkRWP+Rkik++ Ro05_G13903 661 AEKAITLEVLRKYFSGSLKDAAKSLGVCSTTLKRICRQHGIKRWPSRKIKKV 712 5899**********************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 970 aa Download sequence
MDRVSWVYQE EYINYNKNTH LGISRNLQTR DLKAEHWKLD CSWDIFLFNQ LELKNSIISF 60 ILGTLKYSKR VIMEDGAVSP ATMLGAPTDS AMDLDFMDEL FLDGCWLEAT DGPGFPNQSA 120 LSSGAILDSF FWSTSETNGN FSMNPSQTNN QEETQTPLFN QLQEESPANI QSLSQNMTDV 180 GFSGQSGNPM IEGYELSRRL WIGPPNNRGS ASYVMERLMR ALVYMKDVMR DKDVLVQAWV 240 PENRGGRRVL TTNDKLFSLE SSCPRLAEYR NISEKYQFST GEDSQDLVKG LPGRVFSGKV 300 PEWTPDVRFF RSDEYPRVDD AQRYDVRGTL ALPIFEQGSR TCLGVIEIVT TTQKMQYQPE 360 LETVCKALEA VDLRSSESLN THNVKASDKP YQAALPEIQE VLRSACETHN LPLAQTWVLC 420 IQQGKDGCRH SDDNYVHCVS TVDNACHVTD PYIQDFHKAC SEHHLLKGQG IVGRAFMTNQ 480 PCFSNDITSL AKTEYPLSHH ARMFGLHAAV AIRLRSIHTG STDFVLEFFL PVDCRDPEEQ 540 KKMLTSLSLI IQNICRSLRV VTGKELEEET DSAVSEVIVP SDHRPSGIAC FTEVQQTDND 600 VSIVPKETPR NMLSTKSSKL RLQDSNLDGG VEFVRECSTF GDGSFSSVGV SKTGEKRRAK 660 AEKAITLEVL RKYFSGSLKD AAKSLGVCST TLKRICRQHG IKRWPSRKIK KVGHSLEKLQ 720 RVIDSVQGAS SAFQINSFYT NYPELASPNL SGTSPFSTSK LIDRPKPTEV PPEGGVLSPQ 780 ATASKSPTSS CSQSSSSSQC CSSRTEQPRP TWSVAGNDDP IGGDNRVLKR VRSEAELNVL 840 RQDGTDELMP RSRSHKNLNE QQNVQPFRPS LKYDRQIAQE GDTRRVKVAY GDEKTRFRIQ 900 SNWRYEDLGQ EIAKRFGIED MSRLDIKYLD DDSEWVLLTC DADLEECLDV CQSSQCNTIK 960 LSLQLSRRHL

Sequence ? help Back to Top

Protein Sequence Length: 970 aa Download sequence

MDRVSWVYQE EYINYNKNTH LGISRNLQTR DLKAEHWKLD CSWDIFLFNQ LELKNSIISF  60
ILGTLKYSKR VIMEDGAVSP ATMLGAPTDS AMDLDFMDEL FLDGCWLEAT DGPGFPNQSA  120
LSSGAILDSF FWSTSETNGN FSMNPSQTNN QEETQTPLFN QLQEESPANI QSLSQNMTDV  180
GFSGQSGNPM IEGYELSRRL WIGPPNNRGS ASYVMERLMR ALVYMKDVMR DKDVLVQAWV  240
PENRGGRRVL TTNDKLFSLE SSCPRLAEYR NISEKYQFST GEDSQDLVKG LPGRVFSGKV  300
PEWTPDVRFF RSDEYPRVDD AQRYDVRGTL ALPIFEQGSR TCLGVIEIVT TTQKMQYQPE  360
LETVCKALEA VDLRSSESLN THNVKASDKP YQAALPEIQE VLRSACETHN LPLAQTWVLC  420
IQQGKDGCRH SDDNYVHCVS TVDNACHVTD PYIQDFHKAC SEHHLLKGQG IVGRAFMTNQ  480
PCFSNDITSL AKTEYPLSHH ARMFGLHAAV AIRLRSIHTG STDFVLEFFL PVDCRDPEEQ  540
KKMLTSLSLI IQNICRSLRV VTGKELEEET DSAVSEVIVP SDHRPSGIAC FTEVQQTDND  600
VSIVPKETPR NMLSTKSSKL RLQDSNLDGG VEFVRECSTF GDGSFSSVGV SKTGEKRRAK  660
AEKAITLEVL RKYFSGSLKD AAKSLGVCST TLKRICRQHG IKRWPSRKIK KVGHSLEKLQ  720
RVIDSVQGAS SAFQINSFYT NYPELASPNL SGTSPFSTSK LIDRPKPTEV PPEGGVLSPQ  780
ATASKSPTSS CSQSSSSSQC CSSRTEQPRP TWSVAGNDDP IGGDNRVLKR VRSEAELNVL  840
RQDGTDELMP RSRSHKNLNE QQNVQPFRPS LKYDRQIAQE GDTRRVKVAY GDEKTRFRIQ  900
SNWRYEDLGQ EIAKRFGIED MSRLDIKYLD DDSEWVLLTC DADLEECLDV CQSSQCNTIK  960
LSLQLSRRHL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G20640.2	0.0	Nin-like family protein