PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro05_G13862

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

SBP

Protein Properties

Length: 1074aa MW: 119015 Da PI: 8.4675

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro05_G13862	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	127	7.2e-40	150	227	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqv+ C++dls+ak+yhrrhkvCevhsk++++ v++++qrfCqqCsrfh lsefDe+krsCrrrLa+hn+rrrk+q+ Ro05_G13862 150 MCQVDFCKEDLSNAKDYHRRHKVCEVHSKSTKAPVAKQMQRFCQQCSRFHPLSEFDEGKRSCRRRLAGHNRRRRKTQP 227 6**************************************************************************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 1074 aa Download sequence
MGFQVGAQVA TPIFLHQSLS GRFCDAAAVM AKKKRDLPYQ TPNYQQHPNL QPRFANPGNA 60 TWNPKVWEWD TVRFVAKPLD TEMMGTSNSE PKRKEEAAGA VKNTVVGDDD DQRLQLNLGG 120 GLASVEEPAS RPNKRVRSGS PGNNGGSYPM CQVDFCKEDL SNAKDYHRRH KVCEVHSKST 180 KAPVAKQMQR FCQQCSRFHP LSEFDEGKRS CRRRLAGHNR RRRKTQPEDV TSRLTIPGDG 240 DSKSSGNLDI VNLLAAIARP QGKNDVRNTN CSSVLDREQL LQILSKINSL PLPVDLAAKL 300 PNLGSLNWKA SDLLSLDLQN KLNGKTSAST MDLITVLSAT LAASSSDTLA MLSQKSSQSS 360 DSEKTKLTCS DQAAGPNFQK RPPQEFHSAG GERSSTSYQS PTEDSDCQVQ ETRVKLPLQL 420 FSSSPEDDSP PKLASSRKYF SSDSSNRTEE RSPSSSPPVM QTLFPMKSMA ETVKSEKLSI 480 SKESNVNLDS SRNGGNNMPF DLFRGSNRGA VSSSIQNFPH QAGYTSSGSD HSPSSLNSDP 540 QDRTGRILFK LFDKEPSQLP GTLRTQIFSW LSNSPSEMES YIRPGCVVLS VYVSMSFAAW 600 EHLEENLVQR VCSLVQSSES DFWRSGRFLV NTGRQLASYK DGKIRLCKAW RTYSSPELIS 660 VSPLAVVGGQ ETSLLIRGRN LTNLGTKIHC TYMGGYTSKE VGTTFHGTMY DEINLGNFQI 720 HDASPGVLGR CFIEVENGFK GNSFPVIIAD ATICRELKLI ESEFDVGTKV CGATSEDENH 780 DYGRPRSREE VLHFLNELGW LFQRKRVCSM FQGSDYSLSR FKFLLTFTVE RDCCVLVKTL 840 LDILVERNLD GDGLSIESLG MLSDVQLLNR AVKRRCRKMI DLLINYSVIS SDKRYIFPPN 900 LAGPGGLTPL HLAASMSNSD EMIDSLTNDP KEIGLNCWNS LLDVNGQSPY AYALMRNNYS 960 YNNLVARKIT DRRNSQVTLT IGNEIEQPHM AMELERRTSI QFRQGSRSCA QCAVAATKYT 1020 RRVPGAQGLL QRPFIHSMLA IAAVCVCVCL FLRGSPDIGS VAPFKWENLD FGTI

Sequence ? help Back to Top

Protein Sequence Length: 1074 aa Download sequence

MGFQVGAQVA TPIFLHQSLS GRFCDAAAVM AKKKRDLPYQ TPNYQQHPNL QPRFANPGNA  60
TWNPKVWEWD TVRFVAKPLD TEMMGTSNSE PKRKEEAAGA VKNTVVGDDD DQRLQLNLGG  120
GLASVEEPAS RPNKRVRSGS PGNNGGSYPM CQVDFCKEDL SNAKDYHRRH KVCEVHSKST  180
KAPVAKQMQR FCQQCSRFHP LSEFDEGKRS CRRRLAGHNR RRRKTQPEDV TSRLTIPGDG  240
DSKSSGNLDI VNLLAAIARP QGKNDVRNTN CSSVLDREQL LQILSKINSL PLPVDLAAKL  300
PNLGSLNWKA SDLLSLDLQN KLNGKTSAST MDLITVLSAT LAASSSDTLA MLSQKSSQSS  360
DSEKTKLTCS DQAAGPNFQK RPPQEFHSAG GERSSTSYQS PTEDSDCQVQ ETRVKLPLQL  420
FSSSPEDDSP PKLASSRKYF SSDSSNRTEE RSPSSSPPVM QTLFPMKSMA ETVKSEKLSI  480
SKESNVNLDS SRNGGNNMPF DLFRGSNRGA VSSSIQNFPH QAGYTSSGSD HSPSSLNSDP  540
QDRTGRILFK LFDKEPSQLP GTLRTQIFSW LSNSPSEMES YIRPGCVVLS VYVSMSFAAW  600
EHLEENLVQR VCSLVQSSES DFWRSGRFLV NTGRQLASYK DGKIRLCKAW RTYSSPELIS  660
VSPLAVVGGQ ETSLLIRGRN LTNLGTKIHC TYMGGYTSKE VGTTFHGTMY DEINLGNFQI  720
HDASPGVLGR CFIEVENGFK GNSFPVIIAD ATICRELKLI ESEFDVGTKV CGATSEDENH  780
DYGRPRSREE VLHFLNELGW LFQRKRVCSM FQGSDYSLSR FKFLLTFTVE RDCCVLVKTL  840
LDILVERNLD GDGLSIESLG MLSDVQLLNR AVKRRCRKMI DLLINYSVIS SDKRYIFPPN  900
LAGPGGLTPL HLAASMSNSD EMIDSLTNDP KEIGLNCWNS LLDVNGQSPY AYALMRNNYS  960
YNNLVARKIT DRRNSQVTLT IGNEIEQPHM AMELERRTSI QFRQGSRSCA QCAVAATKYT  1020
RRVPGAQGLL QRPFIHSMLA IAAVCVCVCL FLRGSPDIGS VAPFKWENLD FGTI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	870	875	RAVKRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G20980.1	0.0	SBP family protein