PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro05_G13854

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

FAR1

Protein Properties

Length: 508aa MW: 57259.6 Da PI: 6.2001

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro05_G13854	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	30.6	1.1e-09	78	125	2	52
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkkteker 52 fY+ Y+ +GFsvrk+k k+ ++g+i +r++ Cs g+r++ek+k k+r Ro05_G13854 78 FYSYYSLAMGFSVRKHKADKN-NDGSIRWRQLLCSSLGQRRSEKSK--KQR 125 9*************99998.9999*************99988..222 PP

Sequence ? help Back to Top
Protein Sequence Length: 508 aa Download sequence
MEESYASSSE SEHYGSMPLP IDSFRMSIDH SNRPTEATDN VDDEVTDCLH FQGKKYEDLV 60 LEDLEEVEFK SVDEVDLFYS YYSLAMGFSV RKHKADKNND GSIRWRQLLC SSLGQRRSEK 120 SKKQRFCNDE DNVNDAGSSR SQQSKLPPPS RRRVLEDECR SISSSPVIGR HLRCLQEQIA 180 KIFTHDIFLL LKDQIGFESK FVILGHDELL DPVCSVFHLT QFNKPGRRWV VTYNNNSGNA 240 TLKCSCKLFE SDGIPCCHIF AIMKSRWTIA VGLSRNISST GGFPDQLVRV VRYGEMMSEC 300 AQLCFAASFS DEGYEKTVDV FRRLNISSKK FPVQPQQSND DHFEGLHPNV VKDPIVCRTK 360 GTQSNEYNSK KNTQGRDGPL CGYCSRPGHN IRTCPTAKET RINCNSSSQS RIATDAALSS 420 GAESENDEDD LIDNIKDARA FEFFSGYENH LNSASDSVHY RYPNTISNAT SQAGQSSGFN 480 GSNPWRDMTI CSIHLLNSIH MAYVTTDN

Sequence ? help Back to Top

Protein Sequence Length: 508 aa Download sequence

MEESYASSSE SEHYGSMPLP IDSFRMSIDH SNRPTEATDN VDDEVTDCLH FQGKKYEDLV  60
LEDLEEVEFK SVDEVDLFYS YYSLAMGFSV RKHKADKNND GSIRWRQLLC SSLGQRRSEK  120
SKKQRFCNDE DNVNDAGSSR SQQSKLPPPS RRRVLEDECR SISSSPVIGR HLRCLQEQIA  180
KIFTHDIFLL LKDQIGFESK FVILGHDELL DPVCSVFHLT QFNKPGRRWV VTYNNNSGNA  240
TLKCSCKLFE SDGIPCCHIF AIMKSRWTIA VGLSRNISST GGFPDQLVRV VRYGEMMSEC  300
AQLCFAASFS DEGYEKTVDV FRRLNISSKK FPVQPQQSND DHFEGLHPNV VKDPIVCRTK  360
GTQSNEYNSK KNTQGRDGPL CGYCSRPGHN IRTCPTAKET RINCNSSSQS RIATDAALSS  420
GAESENDEDD LIDNIKDARA FEFFSGYENH LNSASDSVHY RYPNTISNAT SQAGQSSGFN  480
GSNPWRDMTI CSIHLLNSIH MAYVTTDN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22170.2	1e-07	FAR1 family protein