PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro05_G13848

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

HSF

Protein Properties

Length: 561aa MW: 60839.6 Da PI: 4.6951

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro05_G13848	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	114.6	6.4e-36	42	133	2	102
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 Fl+k+y++++d++++ ++sws ++nsfvv+++ efa+++LpkyFkh+nf+SFvRQLn+YgF+kv+ ++ weF+++ F +g+k+ll++i+ Ro05_G13848 42 FLSKTYDMVDDPATDPIVSWSPTNNSFVVWNPPEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGQKHLLKSIN 129 9******************999*************************************999.........****************** PP XXXX CS HSF_DNA-bind 99 rkks 102 r+k Ro05_G13848 130 RRKP 133 *986 PP

Sequence ? help Back to Top
Protein Sequence Length: 561 aa Download sequence
MAGANNNGDE ASMGGVGAQK AGLDSAPPAP TPLLNSNAPP PFLSKTYDMV DDPATDPIVS 60 WSPTNNSFVV WNPPEFARDL LPKYFKHNNF SSFVRQLNTY GFRKVDPDRW EFANEGFLRG 120 QKHLLKSINR RKPAHGHSHP QPQQPSHGQS SVASCVEVGK FGLEEEVERL KRDKNVLMQE 180 LIRLRQQQQS TDNQLQTMVQ RLQGMEQRQQ QMMSFLAKAV QSPGFLNQFV QQQNESNRRI 240 TEANKKRRLK QEGIAENKRS DTPDGQIVKY QPPMNEAAKA MLRQIMETNT SSQLDSFSNH 300 LENFLIGEGS SSSSAAESGS SSSHVSGATL QEVPPTSGHG PLPAISEIQS SFKPINSGEA 360 VRDPFSDINV LIGAQEAPAI PISQADVIPE VSQVQDLAHE GLVDIPEGNA TPEAGGGFIK 420 DMAPEPGDGF IDSTSLDFMS LDIDSISPDA DIDALLDNPN LWDFLEQIPV QDEMDSTAEG 480 MPEGNEVQRT ENGWNKTQHM DKLTEQMGNL KSNTKGFDVA GLVHDGGVQG AAAGGLGLST 540 HAVVVAGCAN GKWLAVALGS L

Sequence ? help Back to Top

Protein Sequence Length: 561 aa Download sequence

MAGANNNGDE ASMGGVGAQK AGLDSAPPAP TPLLNSNAPP PFLSKTYDMV DDPATDPIVS  60
WSPTNNSFVV WNPPEFARDL LPKYFKHNNF SSFVRQLNTY GFRKVDPDRW EFANEGFLRG  120
QKHLLKSINR RKPAHGHSHP QPQQPSHGQS SVASCVEVGK FGLEEEVERL KRDKNVLMQE  180
LIRLRQQQQS TDNQLQTMVQ RLQGMEQRQQ QMMSFLAKAV QSPGFLNQFV QQQNESNRRI  240
TEANKKRRLK QEGIAENKRS DTPDGQIVKY QPPMNEAAKA MLRQIMETNT SSQLDSFSNH  300
LENFLIGEGS SSSSAAESGS SSSHVSGATL QEVPPTSGHG PLPAISEIQS SFKPINSGEA  360
VRDPFSDINV LIGAQEAPAI PISQADVIPE VSQVQDLAHE GLVDIPEGNA TPEAGGGFIK  420
DMAPEPGDGF IDSTSLDFMS LDIDSISPDA DIDALLDNPN LWDFLEQIPV QDEMDSTAEG  480
MPEGNEVQRT ENGWNKTQHM DKLTEQMGNL KSNTKGFDVA GLVHDGGVQG AAAGGLGLST  540
HAVVVAGCAN GKWLAVALGS L

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	244	251	NKKRRLKQ
2	245	250	KKRRLK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32330.1	1e-128	HSF family protein