PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro05_G13822

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

G2-like

Protein Properties

Length: 419aa MW: 47155.9 Da PI: 7.8603

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro05_G13822	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	101.8	4.4e-32	232	285	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 pr+rWt++LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+ Ro05_G13822 232 PRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 285 9****************************************************7 PP
2	Myb_DNA-binding	48.3	2.2e-15	233	284	1	48
TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg...tWktIartmg.kgRtlkqcksrwqkyl 48 r+rWTt ++ ++v+av++lGg+ t+k++ + m k +tl ++ks++q+y+ Ro05_G13822 233 RMRWTTTLHARFVHAVELLGGHeraTPKSVLELMDvKDLTLAHVKSHLQMYR 284 89************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 419 aa Download sequence
MELFPAQPDL SLQISPPNTK PTSSGSWRRS ADEEEAADVD LGFWKRALDS RNSSISSDTF 60 SDLSLSNPTR LSHDQYSNTN RINHFHHQNH FGLQNGHNGN TNGLLFHAFQ QNQFLNPQHQ 120 LHHQRIFEQQ HQHQQEQQGG YLGPELGFLR PIRGIPVYQN PPPPNPHHHH HHHPPPNLFP 180 FSSQNIKPNL NLDTTATSLT SSNSTLSSPS SNPFLRSRFL SRFPAKRSMR APRMRWTTTL 240 HARFVHAVEL LGGHERATPK SVLELMDVKD LTLAHVKSHL QMYRTVKTTD KAAATSGQSE 300 LYENASSGDT TEDIMFDNIN QNPTRSSEQG RPNHAQDKEY YGGLWSNSSS REAWLHGNKT 360 KDSAGNMPSL LDHEKDMMDP KGLSSYERIS DVSSSTNHSG TSPMKPNLEF TLGRGGHTN

Sequence ? help Back to Top

Protein Sequence Length: 419 aa Download sequence

MELFPAQPDL SLQISPPNTK PTSSGSWRRS ADEEEAADVD LGFWKRALDS RNSSISSDTF  60
SDLSLSNPTR LSHDQYSNTN RINHFHHQNH FGLQNGHNGN TNGLLFHAFQ QNQFLNPQHQ  120
LHHQRIFEQQ HQHQQEQQGG YLGPELGFLR PIRGIPVYQN PPPPNPHHHH HHHPPPNLFP  180
FSSQNIKPNL NLDTTATSLT SSNSTLSSPS SNPFLRSRFL SRFPAKRSMR APRMRWTTTL  240
HARFVHAVEL LGGHERATPK SVLELMDVKD LTLAHVKSHL QMYRTVKTTD KAAATSGQSE  300
LYENASSGDT TEDIMFDNIN QNPTRSSEQG RPNHAQDKEY YGGLWSNSSS REAWLHGNKT  360
KDSAGNMPSL LDHEKDMMDP KGLSSYERIS DVSSSTNHSG TSPMKPNLEF TLGRGGHTN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32240.1	2e-68	G2-like family protein