PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro05_G11969

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

MYB_related

Protein Properties

Length: 620aa MW: 65465.6 Da PI: 8.6198

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro05_G11969	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	34	6.9e-11	207	251	1	44
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.TTS-HHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.kgRtlkqcksrw 44 r++W++eEd+ l+ av+++G g+W+tI + Rt++q+ rw Ro05_G11969 207 RKKWSEEEDLELISAVEKYGVGNWTTILKGDFkGDRTANQLSQRW 251 789**********************98422359***99999 PP

Sequence ? help Back to Top
Protein Sequence Length: 620 aa Download sequence
MGEKAKDRKG FITEEDTATL LQRYTATTVL TLLQEVAHWP PEVKIDWNQL VAKTTTGISN 60 AREYQMVWHH LAYREALLDK FDNGTPLDDD SDLEYEVEVL PAVTCEASTE AAACVKVLIA 120 SGLPSDSSHL NGTTVEAPLI INIPNGQSCK TYENSRPTAS AKGMNITVPV SVQKQILPAT 180 TTSAAAKVEG VDSIRPASNS MAPRKKRKKW SEEEDLELIS AVEKYGVGNW TTILKGDFKG 240 DRTANQLSQR WGIVKKRQNL GVGEGDKPSS KPSEALVAAH KAMNHFLDDG PNRTANTIGT 300 AGTIANSNSA GINANSKSAG TNANSKSAVT NGMSNSGLRT TTVEGLNATK PYQMTSLGST 360 PKARVTSKKT LPKSKFNSDP VRATAVAAGA RIATPLDAAL LKAAQAKNPI HIMPPKGGSS 420 NKSLPPGGLC IKSEPHPNVH NIRTGPAATP PSSHPPTAVT ASAKHPGSLK ALSQTSQQAS 480 KIDIKINVVN CSPNAELLPK QEGKKSIIPV SECAPMGQVQ DGAVLSGIGQ DDRVQEDKVD 540 SKQKAVSESL LTKVQNPAGS LNTEKYGSND KAVIGVQAVE KPSAKDEIIS CSQVSVGGGD 600 NPSAVNSEDQ NTAEEQTQML

Sequence ? help Back to Top

Protein Sequence Length: 620 aa Download sequence

MGEKAKDRKG FITEEDTATL LQRYTATTVL TLLQEVAHWP PEVKIDWNQL VAKTTTGISN  60
AREYQMVWHH LAYREALLDK FDNGTPLDDD SDLEYEVEVL PAVTCEASTE AAACVKVLIA  120
SGLPSDSSHL NGTTVEAPLI INIPNGQSCK TYENSRPTAS AKGMNITVPV SVQKQILPAT  180
TTSAAAKVEG VDSIRPASNS MAPRKKRKKW SEEEDLELIS AVEKYGVGNW TTILKGDFKG  240
DRTANQLSQR WGIVKKRQNL GVGEGDKPSS KPSEALVAAH KAMNHFLDDG PNRTANTIGT  300
AGTIANSNSA GINANSKSAG TNANSKSAVT NGMSNSGLRT TTVEGLNATK PYQMTSLGST  360
PKARVTSKKT LPKSKFNSDP VRATAVAAGA RIATPLDAAL LKAAQAKNPI HIMPPKGGSS  420
NKSLPPGGLC IKSEPHPNVH NIRTGPAATP PSSHPPTAVT ASAKHPGSLK ALSQTSQQAS  480
KIDIKINVVN CSPNAELLPK QEGKKSIIPV SECAPMGQVQ DGAVLSGIGQ DDRVQEDKVD  540
SKQKAVSESL LTKVQNPAGS LNTEKYGSND KAVIGVQAVE KPSAKDEIIS CSQVSVGGGD  600
NPSAVNSEDQ NTAEEQTQML

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	205	209	KKRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09710.1	1e-77	MYB_related family protein