PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro05_G09404
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family ERF
Protein Properties Length: 289aa    MW: 32128 Da    PI: 9.2602
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro05_G09404genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.88.4e-21169218255
          AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                   y+GVr+++ +g+WvAeIr p++   r+r +lg+f+taeeAa a+++a+ kl+g
  Ro05_G09404 169 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDTAEEAALAYDKAAYKLRG 218
                  59******9.**********965...5*************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    
MAAMDFYSSR PLQSSSDPFT GELMEALEPF MKSASPTPPS SLDFIPTIPT PSSSYSSSSP  60
FLTASTSSSS SSYNYLSFSP SLPTTQQPNL YQDCCSTFSM GFEQQGSIGL NHLTPSQIHQ  120
IQVQIQLQNQ PQLAWQQQQQ QTPSHTLSFL SPKPVPMKQS GSPPKPTKLY RGVRQRHWGK  180
WVAEIRLPKN RTRLWLGTFD TAEEAALAYD KAAYKLRGDF ARLNFPHLKH TGSVVGGEFG  240
EEVRGKQIDE LSIPPIGTIS TSDCLSYKGS SHTTRPGYTD SKWRQQRPN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22190.16e-36ERF family protein