PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro05_G09366

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

MYB

Protein Properties

Length: 327aa MW: 36992.1 Da PI: 6.2234

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro05_G09366	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	63.1	5.5e-20	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++lv++++q+G g+W++ ++ g++R++k+c++rw +yl Ro05_G09366 14 KGPWTPEEDQKLVQYIQQHGHGSWRALPKLAGLNRCGKSCRLRWTNYL 61 79********************************************97 PP
2	Myb_DNA-binding	50.5	4.8e-16	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+++++E++ +++++ lG++ W++Ia ++ gRt++++k++w+++l Ro05_G09366 67 RGNFSQDEEQTILHLHSILGNK-WSAIATHLD-GRTDNEIKNFWNTHL 112 89******************.*****.**********996 PP

Sequence ? help Back to Top
Protein Sequence Length: 327 aa Download sequence
MEKSSCCEEP GPKKGPWTPE EDQKLVQYIQ QHGHGSWRAL PKLAGLNRCG KSCRLRWTNY 60 LRPDIKRGNF SQDEEQTILH LHSILGNKWS AIATHLDGRT DNEIKNFWNT HLKKKLMQMG 120 IDPITHQPRT DLFSNIQDLF PPQYQPLDQH AATTLHEAAE AVAQSVKLQY LHQQYLLQSH 180 LLNSGVNNYI PPPIKENSSH QVLLETPSSF SQPLHYQNLV PHHYNPQVPF STFAVPEIDE 240 MGQGSNFTTM ASSVSQADKN PPENDEYPPW FLQYSSNAIP PTNLAEISIN NPGDASCSTS 300 SNGGIRSSTS SSYWPELFLE ETKTDYD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34670.1	7e-86	MYB family protein