PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro05_G09364
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family MYB
Protein Properties Length: 317aa    MW: 36155.2 Da    PI: 5.9623
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro05_G09364genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding61.61.7e-19754148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd+ lv++++q+G g+W++ ++  g++R++k+c++rw +yl
      Ro05_G09364  7 KGPWTPEEDQTLVQYIQQHGHGSWRALPKLAGLNRCGKSCRLRWTNYL 54
                     79********************************************97 PP
2Myb_DNA-binding50.64.5e-1660105148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+++++E++ +++++  lG++ W++Ia ++  gRt++++k++w+++l
      Ro05_G09364  60 RGNFSQDEEQTILHLHSILGNK-WSAIATHLD-GRTDNEIKNFWNTHL 105
                      89********************.*********.************996 PP
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    
MNLDPKKGPW TPEEDQTLVQ YIQQHGHGSW RALPKLAGLN RCGKSCRLRW TNYLRPDIKR  60
GNFSQDEEQT ILHLHSILGN KWSAIATHLD GRTDNEIKNF WNTHLKKKLM QMGIDPITHQ  120
PRTDLFSNIQ DLFPPQYQPL DQHAATTLHE AAEAVAQSVK LQYLHQQYLL QSHLLNSGVN  180
NYIPPPIKEN SSHQVLLETP SSFSQPLHYQ SLVPHHDNPQ VPFSTFAVPE IDEMGQDSNF  240
TTMTSSLSQA DKNPPENDEY TPWFLQYCSN AIPPTNFSIN NPEDACCSTS SNVGIRSSTS  300
SSYWPELFLE ETKTDYD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34670.13e-80MYB family protein