PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro05_G08639
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family GRAS
Protein Properties Length: 833aa    MW: 91631.1 Da    PI: 5.5401
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro05_G08639genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS324.71.8e-994197822374
         GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                   ++L+++A++v +g+++ aqa+Larl+++ sp g+p+qR+a+yf+eAL+  l+   ++ + + pp++ ++ +++ ++ a+k+fsevsP+++f ++t+N
  Ro05_G08639 419 LDQLYKAADMVGTGNFSHAQAILARLNHQLSPVGKPLQRAAFYFKEALQLLLLM--DNPATSPPPKTPTPFDVIFKMGAYKVFSEVSPLIQFVNFTCN 514
                  679**************************************************9..4555557888888999************************** PP

         GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeL. 194
                  qa+leav++++++Hi+Dfdi+ G++W++++q+L  R+  + +psl+iT+++sp+++++ el+ ++++L++fA+e+g+ fe +v+  + l d +  +L 
  Ro05_G08639 515 QALLEAVSEADQIHIVDFDIGFGAHWASFMQELPLRNrgGASPSLKITAFASPSTHHAVELSLMRDNLTQFASEIGLGFELEVVNID-LLDQNSYSLp 611
                  **********************************99976779*****************************************7444.4444455552 PP

         GRAS 195 ..rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErell 290
                    r + +Ea+aVn+ +   +  +++++l++    +L++vk+lsPk+vv  ++ +d+++ +F +++l+al+ y  l++sl+a    +s++ +k+Er+ll
  Ro05_G08639 612 ffRANDNEAVAVNFPI--WSSSNQPAALPN----LLRFVKQLSPKIVVSLDRGCDRSDLPFPQHILQALQSYINLLESLDAV-NVTSDAVNKIERFLL 702
                  226666********99..555667888888....*********************************************665.579************ PP

         GRAS 291 greivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  +++i++ v  + ++      ++  W+  + +aGF+p+++s+++++qa++++++   +g++ve++++slvl+W++r+L+s+SaWr
  Ro05_G08639 703 QPKIESTVLGRLRS----LDKMPLWKTLFASAGFTPLSFSNFTETQAECVVKRSTARGFHVEKRQESLVLCWQRRELISASAWR 782
                  *********99888....9999*************************************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 833 aa     Download sequence    
MRGMPFQFQQ QGKGVLEIAA ANFPSSICDW NHKKLEEELF IHNSFVSNEP TSVLHMRRSP  60
SPPTSASTLS SSFNGGGGGD NTNTPLLPET SPVGPEPAAG RSSNSRDEWA CELQSIPSGG  120
LEAVTGSGGE RCGLGMEDWE TMLSETAASP GQDQSLLRWI SGDVDDASFG LKQLLQGGHN  180
SNPLEFDGNA GLGMVDQGPG FDHIGSSGIS PSVGFPGSGF NGNNAKMGFV PSSSGPLNYK  240
VSNVGLMNNN GGNPNFSNSA LPHGMVYQNH QQFENLDEKP QILNPQLFMN QSQSQLPHQN  300
PSFFMPVTYA QEEQQFLQSQ PKRHNPGGGG GGLDPSSQIH QKVQFSDPGH EFLLRKQHLQ  360
QQQQQPHFGN FPPGMQFLPQ QHHIQPRPVM VPKQNKVGSE EMAVSQQQQQ QQLLQHSLLD  420
QLYKAADMVG TGNFSHAQAI LARLNHQLSP VGKPLQRAAF YFKEALQLLL LMDNPATSPP  480
PKTPTPFDVI FKMGAYKVFS EVSPLIQFVN FTCNQALLEA VSEADQIHIV DFDIGFGAHW  540
ASFMQELPLR NRGGASPSLK ITAFASPSTH HAVELSLMRD NLTQFASEIG LGFELEVVNI  600
DLLDQNSYSL PFFRANDNEA VAVNFPIWSS SNQPAALPNL LRFVKQLSPK IVVSLDRGCD  660
RSDLPFPQHI LQALQSYINL LESLDAVNVT SDAVNKIERF LLQPKIESTV LGRLRSLDKM  720
PLWKTLFASA GFTPLSFSNF TETQAECVVK RSTARGFHVE KRQESLVLCW QRRELISASA  780
WRQAAFSSGL DGDSMLYALQ QMNWKWKDEI EMAIAMLEDG DGYFITTLVD ELT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.11e-115GRAS family protein