PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro05_G08596
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family MYB
Protein Properties Length: 296aa    MW: 33296.2 Da    PI: 4.7854
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro05_G08596genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.87.8e-163178148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd++l++ +   G  +W+++++  g++R++k+c++rw +yl
      Ro05_G08596 31 KGPWTAEEDKKLINFILTNGQCCWRAVPKLAGLRRCGKSCRLRWTNYL 78
                     79********************************************97 PP
2Myb_DNA-binding53.65e-1787128447
                      S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       T+ E++l +d++++lG++ W++Ia++++ gRt++++k++w+++
      Ro05_G08596  87 LTESEEQLVIDLHARLGNR-WSKIAARLP-GRTDNEIKNHWNTH 128
                      69*****************.*********.************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    
MDLDMTYMKL GKQASVGMGR QPCCDKLGVK KGPWTAEEDK KLINFILTNG QCCWRAVPKL  60
AGLRRCGKSC RLRWTNYLRP DLKRGLLTES EEQLVIDLHA RLGNRWSKIA ARLPGRTDNE  120
IKNHWNTHIK KKLLRMGIDP VTHEPLHKDQ DDLANKETTI SSHSDQPNSN LPQSTTENSS  180
SNSSPTENSS SSSSPNENSS GDDQSTFIES ICNVDESLMN SLWVDETPLI DALWNNDQVL  240
PDGGNYIENG MGMQSNWEDN CSWLLDCQDF GVHDFGMDCF IDTELNSLDT LGMEKI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G22680.12e-97MYB family protein