PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro05_G08585
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family C2H2
Protein Properties Length: 371aa    MW: 42713 Da    PI: 9.7742
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro05_G08585genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.54.8e-05130150323
                  ETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                  C  Cg++F +k+ L +H ++H
  Ro05_G08585 130 CRVCGRRFYTKDKLLNHFKLH 150
                  *****************9998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    
MVIHLKFRNF FCTIQSKRSE TLNPFTLLIR FCHFQAKPPL NSSNPSSYLA PPKITQHSVA  60
IFWDLETKPP KSVSPYEAAG KLKTAASSFG LVRHMIAYAN RHAFNCVPQV VGKQRKERNR  120
VVIRDEPNIC RVCGRRFYTK DKLLNHFKLH EREHMKRLNQ IESARGSRRV KLVGKYSMKM  180
EKYKNAVRDV MIPKVANSLV SELKRAGFWV RSLPDKPQAS YDALRNDIVD MMDQRRFECL  240
VLVSDDSDFV DVVMEARRRC VKTVAVGDLG DGALKRAADS GFSWREILLG KAKKEAVSVV  300
GKWKDRDILR RLEWKYKPDE EKSVFNLDDD VHGESEDEEL GSTVGGMNEN CLREDDTRKW  360
WELDSDADAI S
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G12240.11e-101C2H2 family protein