PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro05_G07411
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family M-type_MADS
Protein Properties Length: 316aa    MW: 34175.7 Da    PI: 9.3534
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro05_G07411genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF52.27.5e-171150342
                 --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
       SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                 ie++s r+ +f kR++g+lKK +ELS+LCd+ ++++i++ 
  Ro05_G07411 11 IESDSARKASFKKRKEGLLKKVSELSTLCDVPACIVIYGR 50
                 9*************************************95 PP
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    
MPRAKVKLAW IESDSARKAS FKKRKEGLLK KVSELSTLCD VPACIVIYGR GSNQPIVWPD  60
HPTAERLIRR YLSLPGFVRC KKTLSHETYL KEKVAKMQDK HNKILRSNTV MNMDDLMRQG  120
QNGKPIYELD INEIYGLVAF SEEKMKEIHN RIVFFDQAAG DPNYSSVKSE MGVNELGVPP  180
RNGMEWPYEI FGVGGDGRGS GAELGFQILP QFSGNNIGGR SSVNVVPNMI PYNGNIGNFG  240
GDGSGNVGLP QVNYGGNNIM GYFGMLPQYY GNNKAGGSNM GLNFGANSNG NNIGWGIGGS  300
NGANSAGGSD AAGLPN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40210.15e-30M-type_MADS family protein