PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro05_G07388

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

LSD

Protein Properties

Length: 147aa MW: 15242.8 Da PI: 7.9166

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro05_G07388	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	42.3	1.3e-13	30	54	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCr+lL YP GA+sV+Ca+C++V Ro05_G07388 30 CSGCRNLLLYPVGATSVCCAVCNAV 54 ************************9 PP
2	zf-LSD1	46.8	4.9e-15	69	93	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggC+tlL+Y rGA+sV+C++C+tV Ro05_G07388 69 CGGCHTLLMYIRGATSVQCSCCHTV 93 ************************9 PP
3	zf-LSD1	41.8	1.7e-13	107	131	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Cr lL+Y +GA+sV+Ca+C++V Ro05_G07388 107 CGNCRMLLMYQYGARSVKCAVCNFV 131 ***********************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 147 aa Download sequence
MPVPLAPYPA PPAPYTPPAA ANGAQSQLVC SGCRNLLLYP VGATSVCCAV CNAVTAVPPP 60 GTEMAQLVCG GCHTLLMYIR GATSVQCSCC HTVNLALEAN QVAHVNCGNC RMLLMYQYGA 120 RSVKCAVCNF VTSVGVSTST PDQKFTN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32540.3	6e-68	LSD family protein